CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G   +RL L  M A   N +K  TA+TVTVDA++G  TG+SA DRATT+  LA   S   DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA  +CE+V   D+GSMA   +LR F
Sbjct:    6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCPA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium paratuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 86/181 (47.51%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G   +RL L  M A   N +K  TA+TVTVDA++G  TG+SA DRATT+  LA   S   DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA  +CE+V   D+GSMA+  +LR F
Sbjct:    6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGVGTGISASDRATTMRLLADPTSIAEDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBT (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G   +RL L  M A   N +K  TA+TVTVDA++G  TG+SA DRATT+  LA   S   DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA  +CE+V   D+GSMA   +LR F
Sbjct:    6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G   +RL L  M A   N +K  TA+TVTVDA++G  TG+SA DRATT+  LA   S   DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA  +CE+V   D+GSMA   +LR F
Sbjct:    6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBO (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G   +RL L  M A   N +K  TA+TVTVDA++G  TG+SA DRATT+  LA   S   DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA  +CE+V   D+GSMA   +LR F
Sbjct:    6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA1 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium avium (strain 104) GN=ribBA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 86/181 (47.51%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            S+  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G   +RL L  M A   N +K  TA+TVTVDA++G  TG+SA DRATT+  LA   S   DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG  PA  +CE+V   D+GSMA+  +LR F
Sbjct:    6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGVGTGISASDRATTMRLLADPTSIAEDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_VIBCM (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ribB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.166e-37
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A++ +R+G+               +I A +  T   MA +++  +GIVC+ +     +RL LP MV    +  +  TAFTV+++AKHG TTGVSA+DR TT+ T A+  +KP D  RPGH+FPL+ R GGVL R GHTE +VDL  +AG  PA VLCE+ + DGSMA+ P++ EF
Sbjct:   17 VENALQALREGRGVLLLDDEDRENEGDIIYAVESLTTAQMALMIRECSGIVCLCLTEAQADRLALPPMVVNNNSANQ--TAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGSMAKTPEIIEF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_VIBCH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio cholerae GN=ribB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.166e-37
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A++ +R+G+               +I A +  T   MA +++  +GIVC+ +     +RL LP MV    +  +  TAFTV+++AKHG TTGVSA+DR TT+ T A+  +KP D  RPGH+FPL+ R GGVL R GHTE +VDL  +AG  PA VLCE+ + DGSMA+ P++ EF
Sbjct:   17 VENALQALREGRGVLLLDDEDRENEGDIIYAVESLTTAQMALMIRECSGIVCLCLTEAQADRLALPPMVVNNNSANQ--TAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGSMAKTPEIIEF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_VIBC3 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ribB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.166e-37
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A++ +R+G+               +I A +  T   MA +++  +GIVC+ +     +RL LPLMV    +  +  TAFTV+++AKHG TTGVSA+DR TT+ T A+  +KP D  RPGH+FPL+ R GGVL R GHTE +VDL  +AG  PA VLCE+ + DGSMA+ P++  F
Sbjct:   17 VENALQALREGRGVLLLDDEDRENEGDIIYAVESLTTVQMALMIRECSGIVCLCLTEAQADRLALPLMVVNNNSANQ--TAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGSMAKTPEIIAF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PELPD (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pelobacter propionicus (strain DSM 2379) GN=ribB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.166e-37
Identity = 81/178 (45.51%), Postives = 113/178 (63.48%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A++ +R G+               LI AAQ  T E +A +++  +GIVC+ +  E + RLDLPLMV+  +N  +  TAFTV+++A  G TTGVSA DR TT+    + D+ P   +RPGH+FPL+ R GGVL+R GHTEA+VDL  LAG  P  VLCE+ + DGSMAR+P++  F
Sbjct:   18 VEAALDALRAGQGVLVTDDEQRENEGDLIFAAQSLTREQVAMLIRECSGIVCLCLTDEAVRRLDLPLMVS--DNSSRYQTAFTVSIEAAEGVTTGVSAADRLTTIRAAIADDAGPLCLSRPGHVFPLRARPGGVLERRGHTEATVDLMRLAGLKPCGVLCELTNPDGSMARMPEIVAF 193          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBBA_MYCTA3.956e-3747.51Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCPA3.956e-3747.51Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBT3.956e-3747.51Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBP3.956e-3747.51Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBO3.956e-3747.51Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCA13.956e-3747.51Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBB_VIBCM5.166e-3743.823,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBB_VIBCH5.166e-3743.823,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBB_VIBC35.166e-3743.823,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBB_PELPD5.166e-3745.513,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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