CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_PELLD (Riboflavin biosynthesis protein ribBA OS=Pelodictyon luteolum (strain DSM 273) GN=ribBA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.503e-36
Identity = 85/182 (46.70%), Postives = 109/182 (59.89%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA-KHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  A+EDIRQGK                I AA   T E + FI +   G++CV++  E    L L  MV +  +  +  T FTV+VDA   G TTG+S  DRATT+  L    S    F+RPGHIFPL+  +GGVL+R GHTEA+VDLA LAG  P  +LCE++ DDGSMARLP+L +F
Sbjct:    6 FDTIESAVEDIRQGKLVIVIDDEDRENEGDFIAAADHVTTEMINFITREARGLLCVAVTMERARELQLDPMVQRNTSQHE--TNFTVSVDAIAEGVTTGISVYDRATTIKMLGDPASHADSFSRPGHIFPLRAMDGGVLRRVGHTEAAVDLARLAGCSPVGLLCEILHDDGSMARLPELLKF 185          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_HAES2 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Haemophilus somnus (strain 2336) GN=ribB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 79/178 (44.38%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AIE  ++G                LI  A+  T E MA ++++G+GIVC+ +  E  ++LDLP MV    +  +  TAFTV+++A  G +TGVSA+DR TT+    + ++KP D +RPGH+FPL+ ++GGVL R GHTEA+VDLA  AG  PA V+CE+ +DDGSMAR  ++ EF
Sbjct:   16 VKRAIEAFKRGNGVLVLDDEDRENEGDLIFPAETITVEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQNNTSINQ--TAFTVSIEAAQGVSTGVSAQDRVTTIQVAIADNAKPQDLSRPGHVFPLRAKKGGVLARRGHTEAAVDLASWAGHKPAGVICEITNDDGSMARTLEIVEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_BUCAP (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ribB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 70/151 (46.36%), Postives = 106/151 (70.20%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            L+ +++  T E MA  +++G+GIVC+ +     ++L+LP+MV  K N     T FTVT++A  G +TGVSA+DR TT+ T  + D++P D NRPGH+FPL+   GG+L RAGHTEA++++  LAGF P  V+CE+ + DGSM+R P++ +F
Sbjct:   43 LVFSSETMTVEQMALTIRYGSGIVCLCITESKRKKLNLPMMV--KHNTSTYRTGFTVTIEASKGVSTGVSAKDRLTTIKTATADDAQPSDLNRPGHVFPLRANGGGILARAGHTEAAIEIVSLAGFKPYGVICELTNKDGSMSRTPEIIKF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_CYTH3 (Riboflavin biosynthesis protein ribBA OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ribBA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 84/179 (46.93%), Postives = 110/179 (61.45%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAK-HGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 690
            SI +AIE IR+G+                I AA+  TPE + F+ K G G++C  +       L L LMV       +  T FTV+VD   +G TTG+SA DR+ T+  L   D+KP D  RPGHIFPLK ++ GVL+R GHTEA+VDLA LAGF PA VL E++ +DGSMARLP+L++
Sbjct:    8 SIADAIEAIRKGEVIIVVDDEDRENEGDFICAAECVTPEIINFMSKEGRGLICAPISEARCTELKLDLMVGSNTATHE--TPFTVSVDLLGNGCTTGISASDRSKTIRALVDPDTKPEDLGRPGHIFPLKAKDEGVLRRVGHTEAAVDLARLAGFKPAGVLIEIMSEDGSMARLPELKQ 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACV8 (Riboflavin biosynthesis protein ribBA OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ribBA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 83/179 (46.37%), Postives = 110/179 (61.45%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 690
            ++I EAI D R+GKF              LI+AA+  TPE + F++KH  G++C  +     + L+LP  V    N   L T FTVTVD   G +TGVS  DRA T+  LA   S P  F RPGH+ PL  ++ GVL+RAGHTEA +D+A LAG  PAA L E++ +DG+MARLP+LR+
Sbjct:    7 NTIEEAIADFREGKFVIVVDDEDRENEGDLIVAAEKITPEQVNFMLKHARGVLCAPITISRCKELELPHQV--DTNTSVLGTPFTVTVDKLEGCSTGVSIHDRAATIRALADPTSTPETFGRPGHVNPLYAQDKGVLRRAGHTEACIDMARLAGLYPAAALMEIMSEDGTMARLPELRK 183          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_CLOBL (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=ribB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.564e-36
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            + +A+E+++ GK               LI  A+  T   MA +++  +GIVC+ +  E +++L L  MV+   N     TAFT++++AK G TTGVSA DR TT+LT    D KP D   PGH+FPL+ R GGVL R GHTE +VDL  LAG++PA +LCE+ + DG+MARLP++  F
Sbjct:   16 VEKALENLKNGKGVLLVDDENRENEGDLIFPAETITVPQMAMLIRECSGIVCLCLTDEKVKKLGLTQMVSN--NTCTYETAFTISIEAKEGVTTGVSAADRVTTILTAVKDDCKPEDLCHPGHVFPLRARAGGVLTRPGHTEGTVDLMRLAGYNPAGILCELTNPDGTMARLPQIINF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHEFN (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella frigidimarina (strain NCIMB 400) GN=ribB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 75/183 (40.98%), Postives = 112/183 (61.20%), Query Frame = 1
Query:  145 EGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            E  + +  A+  +R+G+               +I + +  T   MA +++  +GIVC+ +  E   +L LP MV    +  +  TAFT++++AKHG TTGVSA+DR TT+ T A+RD+K  D   PGH+FPL+ R GGV+ R GHTE +VDL  +AG  PA VLCE+ ++DGSMA+ P++  F
Sbjct:   12 EPITRVENALAALREGRGVLLLDDEDRENEGDIIYSVEHLTTAQMALMIRECSGIVCLCLTDEHANKLQLPPMVINNNSANQ--TAFTISIEAKHGVTTGVSAQDRVTTIKTAANRDAKASDLAHPGHVFPLRARAGGVMSRRGHTEGTVDLMQMAGLMPAGVLCELANEDGSMAKTPEIIAF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHESR (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella sp. (strain MR-7) GN=ribB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +   +E +RQG+               LI AA+  T   MA +++  +GIVC+ +  E ++ L+LP MV  + N  +  TAFTV+++AK G TTGVSA DR TT+    + ++KP D  RPGH++PL+ + GGVL R GHTE ++DL  LAG  PA VLCEV + DG+MARLP++  F
Sbjct:   16 VEAGLEALRQGQGVLVVDDEDRENEGDLIFAAESLTNAQMAMLIRECSGIVCLCLPDEKVKALELPPMV--ENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKAAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLMQLAGLKPAGVLCEVTNPDGTMARLPEIIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHESM (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella sp. (strain MR-4) GN=ribB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +   +E +RQG+               LI AA+  T   MA +++  +GIVC+ +  E ++ L+LP MV  + N  +  TAFTV+++AK G TTGVSA DR TT+    + ++KP D  RPGH++PL+ + GGVL R GHTE ++DL  LAG  PA VLCEV + DG+MARLP++  F
Sbjct:   16 VEAGLEALRQGQGVLVVDDEDRENEGDLIFAAESLTNAQMAMLIRECSGIVCLCLPDEKVKALELPPMV--ENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKAAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLMQLAGLKPAGVLCEVTNPDGTMARLPEIIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PSEHT (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ribB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 78/180 (43.33%), Postives = 111/180 (61.67%), Query Frame = 1
Query:  145 EGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            E  + +  AI  ++QG+                + +A+  T   MA +++ G+GIVC+ M  E +++LDLP MV    +     TA+T+T++AK G TTGVSA DR TT+    + ++KP D +RPGH+F LK + GGVL R GHTEASVDL  LAG  P  V+CE+ + DGSMARLP++
Sbjct:   11 EPLTRVENAITALQQGQGVLVVDDENRENEGDFVFSAEHLTTAQMAEMIREGSGIVCLCMGEERIKQLDLPQMVTHNTSQNN--TAYTITIEAKEGVTTGVSAADRVTTIKAATADNAKPEDLSRPGHVFGLKAKTGGVLVRRGHTEASVDLMQLAGLKPFGVICELTNPDGSMARLPEV 188          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBBA_PELLD1.503e-3646.70Riboflavin biosynthesis protein ribBA OS=Pelodicty... [more]
RIBB_HAES21.963e-3644.383,4-dihydroxy-2-butanone 4-phosphate synthase OS=H... [more]
RIBB_BUCAP1.963e-3646.363,4-dihydroxy-2-butanone 4-phosphate synthase OS=B... [more]
RIBBA_CYTH31.963e-3646.93Riboflavin biosynthesis protein ribBA OS=Cytophaga... [more]
RIBBA_BACV81.963e-3646.37Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBB_CLOBL2.564e-3643.823,4-dihydroxy-2-butanone 4-phosphate synthase OS=C... [more]
RIBB_SHEFN4.373e-3640.983,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SHESR5.712e-3643.823,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SHESM5.712e-3643.823,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_PSEHT5.712e-3643.333,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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