CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_PELPB (Riboflavin biosynthesis protein ribBA OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.460e-36
Identity = 83/181 (45.86%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  145 EGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA-KHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            + F +I  A+EDIRQGK                I AA   T E + FI +   G++CV++  +  + L L  MV +  +  +  T FTV+VDA   G TTG+S  DRA T+  L    S   DF+RPGHIFPL+  +GGVL+R GHTEA+VDLA LAG  P  +LCE+++DDGSMARLP+L
Sbjct:    4 KNFDTIDAALEDIRQGKLVIVIDDEDREDEGDFIGAADKVTNEMVNFITREARGLLCVAVTMDRAKELQLDPMVQRNTSQHE--TNFTVSVDAIAEGVTTGISVYDRAMTIKMLGDLSSTADDFSRPGHIFPLRAMDGGVLRRVGHTEAAVDLARLAGCSPTGLLCEILNDDGSMARLPQL 182          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_DESDA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=ribB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.743e-36
Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            + +A+  +R G                LI  AQ  T   MA +++H +GIVC+ +  E   RLDLP+M  +  N ++  TAFT++++A  G TTGVSA DR  T+    + ++ P +  RPGH+FPL+ + GGVL+R GHTEA+VDL  LAG  P  VLCE+  DDGSMARLP++  F
Sbjct:   18 VQKALASLRAGGGVLVVDDEDRENEGDLIFPAQTITVPQMAMLIRHCSGIVCLCLTDEYTRRLDLPMMTERNTNTQQ--TAFTISIEAATGVTTGVSAADRVATIQAAVAENASPENLRRPGHVFPLRAKPGGVLERRGHTEATVDLMRLAGHAPCGVLCELTLDDGSMARLPQVAAF 193          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_CHRVO (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Chromobacterium violaceum GN=ribB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.743e-36
Identity = 77/151 (50.99%), Postives = 103/151 (68.21%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            LI+AA   T   MA +++ G+GIVC+ +  E  ERL LP M A  EN  +  TAFTV ++A  G TTGVSA DR TT+      D+KPGD  RPGH++P+  R GGV +R GHTEASV+LA LAGF PA VLCE+++ DG+M R  +++++
Sbjct:   39 LILAADTLTVPEMARMIRDGSGIVCLCLTPERAERLQLPPMAA--ENGSRYGTAFTVAIEAAQGVTTGVSAADRTTTIRAAIHPDAKPGDLVRPGHVYPIVARAGGVRERRGHTEASVELARLAGFSPAGVLCELMNPDGTMMRGQQVQDY 187          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHESW (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella sp. (strain W3-18-1) GN=ribB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 78/178 (43.82%), Postives = 109/178 (61.24%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +   +  +RQG+               LI AAQ  T   MA +++  +GIVC+ +  E ++ L+LP MV  + N  +  TAFTV+++AK G TTGVSA DR TT+    +  +KP D  RPGH++PL+ + GGVL R GHTE ++DL  LAG  PA VLCEV + DG+MARLP++  F
Sbjct:   16 VEAGLNALRQGQGVLVVDDEDRENEGDLIFAAQTLTNAQMAMLIRECSGIVCLCLPDEKVKALELPPMV--ENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKAAIADGAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLMQLAGLKPAGVLCEVTNPDGTMARLPEIIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHEPC (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ribB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 78/178 (43.82%), Postives = 109/178 (61.24%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +   +  +RQG+               LI AAQ  T   MA +++  +GIVC+ +  E ++ L+LP MV  + N  +  TAFTV+++AK G TTGVSA DR TT+    +  +KP D  RPGH++PL+ + GGVL R GHTE ++DL  LAG  PA VLCEV + DG+MARLP++  F
Sbjct:   16 VEAGLNALRQGQGVLVVDDEDRENEGDLIFAAQTLTNTQMAMLIRECSGIVCLCLPDEKVKALELPPMV--ENNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKAAIADGAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLMQLAGLKPAGVLCEVTNPDGTMARLPEIIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHELP (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ribB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 77/183 (42.08%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  145 EGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  + +  A+  +R G+               LI +A+  T E MA +++  +GIVC+ +  E +++L+LP MV  ++N  +  TAFTV+++AK G TTGVSA DR TT+    + D+KP D  RPGH++PL+ + GGVL R GHTE ++DL  LAG  PA VLCEV + +G+MARLP++  F
Sbjct:   11 DAITRVEAALTALRAGQGVLVVDDEDRENEGDLIYSAEHLTQEQMALLIRECSGIVCLCLTDERVKQLELPPMV--EDNSSQYGTAFTVSIEAKVGVTTGVSAADRVTTIKAAIADDAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLMKLAGLKPAGVLCEVTNVNGTMARLPEIIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIB3_YEAST (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Saccharomyces cerevisiae GN=RIB3 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 83/187 (44.39%), Postives = 111/187 (59.36%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPL----MVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDD--GSMARLPKLREF 693
            F+ I +AIE  +Q KF              LI AA+  + E MAF+V+H +G VC  M     ++LDLPL    M  +  +D++  TA+T+TVD   GTTTG+SA DR+ T   LA   S P  F +PGHI PL+  +GGVL+R GHTEA VDL  L+G  P AV+ E+V+DD  G+M RL   + F
Sbjct:    2 FTPIDQAIEHFKQNKFVIVMDDAGRENEGDLICAAENVSTEQMAFLVRHSSGYVCAPMTNAIADKLDLPLLRTGMKFESNDDDRHGTAYTITVDVAQGTTTGISAHDRSMTCRALADSSSTPKSFLKPGHICPLRAADGGVLQRRGHTEAGVDLCKLSGLSPVAVIGELVNDDEQGTMMRLNDCQAF 188          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_VIBHA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio harveyi GN=ribB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 80/178 (44.94%), Postives = 108/178 (60.67%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AIE ++ G                LI +AQ  T   MA +++ G+GIVC+ +  E    LDLP MV  K+N  K  TAFTV+++AK G TTGVSA+DR TTV T    D++P D  RPGH+FPL  +  GVL R GHTE ++DL  LA   P+ +LCE+ + DG+MA+LP+  EF
Sbjct:   17 VERAIEALKNGLGVLLMDDEDRENEGDLIFSAQHLTEAQMALMIREGSGIVCLCLTEERANWLDLPPMV--KDNCSKNQTAFTVSIEAKEGVTTGVSAKDRVTTVKTATYFDAQPEDLARPGHVFPLVAKTNGVLARRGHTEGTIDLMYLANLVPSGILCELTNPDGTMAKLPETIEF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHEB8 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella baltica (strain OS185) GN=ribB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 76/178 (42.70%), Postives = 109/178 (61.24%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +   +  +RQG+               LI AA+  T   MA +++  +GIVC+ +  E ++ L+LP MV  + N  +  TAFTV+++A  G TTGVSA DR TT+    + ++KP D  RPGH++PL+ + GGVL R GHTE ++DL  LAG  PA VLCEV + DG+MARLP++  F
Sbjct:   16 VEAGLNALRQGQGVLVVDDEDRENEGDLIFAAETLTNAQMAMLIRECSGIVCLCLPDEKIKALELPAMV--EHNSSQYGTAFTVSIEATVGVTTGVSAADRVTTIKAAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLVQLAGLKPAGVLCEVTNPDGTMARLPEIIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SHEB5 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=ribB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 76/178 (42.70%), Postives = 109/178 (61.24%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +   +  +RQG+               LI AA+  T   MA +++  +GIVC+ +  E ++ L+LP MV  + N  +  TAFTV+++A  G TTGVSA DR TT+    + ++KP D  RPGH++PL+ + GGVL R GHTE ++DL  LAG  PA VLCEV + DG+MARLP++  F
Sbjct:   16 VEAGLNALRQGQGVLVVDDEDRENEGDLIFAAETLTNAQMAMLIRECSGIVCLCLPDEKIKALELPAMV--EHNSSQYGTAFTVSIEATVGVTTGVSAADRVTTIKAAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLVQLAGLKPAGVLCEVTNPDGTMARLPEIIAF 191          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBBA_PELPB7.460e-3645.86Riboflavin biosynthesis protein ribBA OS=Pelodicty... [more]
RIBB_DESDA9.743e-3643.263,4-dihydroxy-2-butanone 4-phosphate synthase OS=D... [more]
RIBB_CHRVO9.743e-3650.993,4-dihydroxy-2-butanone 4-phosphate synthase OS=C... [more]
RIBB_SHESW1.272e-3543.823,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SHEPC1.272e-3543.823,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SHELP1.272e-3542.083,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIB3_YEAST1.272e-3544.393,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_VIBHA2.835e-3544.943,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBB_SHEB82.835e-3542.703,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SHEB52.835e-3542.703,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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