CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig688 contig Ccv1_Contig688:435..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERPB (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ribB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERPA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ribB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERP3 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ribB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_KLEP7 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ribB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 84/181 (46.41%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  +F
Sbjct:   13 FERVEHALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRGGHTEATIDLVTLAGFKPAGVLCELTNDDGTMARAPECIKF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PSEAE (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pseudomonas aeruginosa GN=ribB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.457e-41
Identity = 90/180 (50.00%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            ++I E IEDIRQGK               LIMAA+    E + F+VKH  G+VC+ M  E  ERL LPLMV  + N     T FTV+++A  G TTG+SA DRA TV   A++++   D   PGHIFPL  + GG L RAGHTEA+ DLA +AGF+P+ V+CEV++DDGSMAR P+L  F
Sbjct:    4 NTIDELIEDIRQGKMVILMDDEDRENEGDLIMAAECVRTEDINFMVKHARGLVCMPMTRERCERLGLPLMV--QRNGSGFGTKFTVSIEAAEGVTTGISAADRARTVQAAAAKNAVAADIVSPGHIFPLMAQPGGTLARAGHTEAACDLARMAGFEPSGVICEVMNDDGSMARRPELEAF 181          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_EDWI9 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=ribB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.457e-41
Identity = 85/178 (47.75%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A+  +R G+               +I AA+  T E MA  ++HG+GIVC+ +     ++LDLP+MV+   N     TAFTVT++A  G TTGVSA+DR TTV    + D+KPGD +RPGH+FPL+ R GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P++  F
Sbjct:   16 VERALSALRDGRGVMVLDDENRENEGDMIFAAEKMTVEQMALTIRHGSGIVCLCITEARRQQLDLPMMVSN--NTSHYGTAFTVTIEAAEGVTTGVSAQDRLTTVRAAIADDAKPGDLHRPGHVFPLRARPGGVLARRGHTEATIDLVSLAGFRPAGVLCELTNDDGTMARAPQVMAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLPN (Riboflavin biosynthesis protein ribBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.457e-41
Identity = 93/181 (51.38%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F S+  AIED+R GKF              LI+A +  T E M F+++H TG+VC ++  E L  LDLP MV  K+N  +  T FTV+VDA HG TTGVSA DR   V  LA   SKP DF  PGH FPL    GGVLKRAGHTE++VDL  LAG  P  VL E+V++D SM RLP++ EF
Sbjct:   13 FVSLERAIEDLRAGKFVIVVDEASREDEGDLIIAGEKITVEKMTFLLQHTTGVVCAALSQERLLSLDLPPMV--KDNRCRFKTPFTVSVDAAHGVTTGVSAADRTKVVQLLADPKSKPEDFISPGHFFPLASSPGGVLKRAGHTESTVDLMELAGLQPCGVLAELVNEDYSMMRLPQILEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACWK (Riboflavin biosynthesis protein ribBA OS=Bacillus weihenstephanensis (strain KBAB4) GN=ribBA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.457e-41
Identity = 90/180 (50.00%), Postives = 118/180 (65.56%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 690
            F  I EA+ED++QGK                I  A+  TPE + F++ HG G+VCV +  E  ERL L  MV+   N +   TAFTV++D    TTTG+SA +RATT+  L +  SK  DFNRPGHIFPL  +EGGVL+RAGHTEA+VDLA L G +PA V+CE++++DG+MAR+P L E
Sbjct:    2 FHRIEEALEDLKQGKVVIVCDDENRENEGDFIALAEYITPETINFMITHGRGLVCVPITEEYAERLQLEPMVSH--NTDSHHTAFTVSIDHV-STTTGISAHERATTIQELLNPASKGSDFNRPGHIFPLIAKEGGVLRRAGHTEAAVDLAKLCGAEPAGVICEIINEDGTMARVPDLLE 178          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_KLEP3 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Klebsiella pneumoniae (strain 342) GN=ribB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 83/181 (45.86%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I AA+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  +F
Sbjct:   13 FERVEHALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRGGHTEATIDLVTLAGFKPAGVLCELTNDDGTMARAPECIKF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ECOSM (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ribB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 84/181 (46.41%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    + D+KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EF
Sbjct:   13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADDAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEF 191          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBB_YERPB2.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_YERPA2.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_YERP32.027e-4147.193,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_KLEP72.647e-4146.413,4-dihydroxy-2-butanone 4-phosphate synthase OS=K... [more]
RIBB_PSEAE3.457e-4150.003,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBB_EDWI93.457e-4147.753,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_CHLPN3.457e-4151.38Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIBBA_BACWK3.457e-4150.00Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBB_KLEP35.897e-4145.863,4-dihydroxy-2-butanone 4-phosphate synthase OS=K... [more]
RIBB_ECOSM5.897e-4146.413,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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