CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_VIBPA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio parahaemolyticus GN=ribB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 70/151 (46.36%), Postives = 101/151 (66.89%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +I + +  T E MA +++  +GIVC+ +     ++L+LP MV    +  +  TAFTV+++AK G TTGVSA DR TT+ T A+  +KP D  RPGH+FPL+ R GGV+ R GHTE ++DL  +AG  PA VLCEV + DG+MA+ P++  F
Sbjct:   44 IIYSVEHLTNEQMALMIRECSGIVCLCLTDAQADKLELPPMVVNNNSANQ--TAFTVSIEAKVGVTTGVSAADRVTTIKTAANPHAKPEDLARPGHVFPLRARPGGVMTRRGHTEGTIDLMQMAGLQPAGVLCEVTNPDGTMAKAPEIVAF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_BUCBP (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ribB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 70/178 (39.33%), Postives = 109/178 (61.24%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI  +R G                LI + +  T E MA  +++G+GIVC+ +     ++L LP+MV  + N  K  T FTVT++A  G +TGVSA+DR TT+    + ++KP D NRPGHIFPL+  + G+L R GHTEA+++   LAGF PA ++CE+ + +G+M+++P + +F
Sbjct:   16 VKNAISALRYGHGIIVLDNEDRENEGDLIFSGETMTTEQMALTIRYGSGIVCLCITESKRKQLKLPMMV--QNNTSKFGTNFTVTIEAAEGISTGVSAKDRLTTIRAAINDNAKPSDLNRPGHIFPLQAHKNGILGRIGHTEAAIEFVTLAGFKPAGIICELTNRNGTMSKVPDIIKF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACA2 (Riboflavin biosynthesis protein ribBA OS=Bacillus amyloliquefaciens (strain FZB42) GN=ribBA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 76/180 (42.22%), Postives = 112/180 (62.22%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 690
            F  I EA+E +++G+                +  A+ ATPE + F+  HG G++C  +  +   RLDL  MV    +  +  TAFTV++D +  T TG+SA++R+ T+  L + +S   DF RPGHIFPL  ++GGVLKRAGHTEA+VDLA   G   A V+CE++++DG+MAR+P+L E
Sbjct:    2 FHPIEEALEALKKGEVIIVVDDEDRENEGDFVALAEHATPEVVNFMATHGRGLICTPLSEDIAGRLDLHPMVDHNTDSHE--TAFTVSIDHRL-TKTGISAQERSFTIQALLNEESVSDDFQRPGHIFPLIAKKGGVLKRAGHTEAAVDLAKACGSQGAGVICEIMNEDGTMARVPELAE 178          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_RHORT (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ribB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.191e-33
Identity = 77/175 (44.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            +  A++ +RQG+               LI AA+  T E M+ +++ G+GIVC+ +   DL+RL LP MVA   N  +  T FTV+++A+ G TTGVSA DR TT+       S   D  RPGH+FPL+    G+  R GHTEA++ L  LAG  PA VLCEV++ DG+MARLP L
Sbjct:   19 VSRAVDSLRQGQGVIVVDDEDRENEGDLIFAAETLTAEQMSRMIRDGSGIVCLILTDPDLDRLALPPMVAH--NTSRNGTGFTVSIEAREGVTTGVSAADRVTTIRAAIDPASTADDLARPGHVFPLRAHADGLSARRGHTEATIALMRLAGLRPAGVLCEVMNPDGTMARLPTL 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_CHLL2 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=ribB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.191e-33
Identity = 77/178 (43.26%), Postives = 105/178 (58.99%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            + +A+  +R G+               LI  A+  T   MA +++  +GIVC+ M    +  L+LP+MV  + N     TAFTV+++A  G TTGVSA DR  TV T  S +++P D   PGHIFPL+ R GGVL+R GHTEA+VDL  LAG  PA VLCE+ + DGSMA + +   F
Sbjct:   16 VEKALAALRNGQGVLVADDPGRENEADLIFPAESVTIPQMALLIRECSGIVCLCMTDGKIRSLELPMMV--ENNTSGFQTAFTVSIEAAEGVTTGVSAADRVKTVRTAVSENARPSDLRHPGHIFPLRARPGGVLERPGHTEATVDLMRLAGLSPAGVLCELTNPDGSMAGIEETFAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_HELHP (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Helicobacter hepaticus GN=ribB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 76/170 (44.71%), Postives = 108/170 (63.53%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMA 669
            I EAIE I+QG+               L+MA   ++P+ + F+ +   G++CVS+  E  ++LDLP MV  ++ND    TAFT+++DAK   T G+SA +R  T+  +   ++KP DF RPGHIFPL  +EGGVL R GHTEASVD+  LAG  P +V+CE++  DG+MA
Sbjct:    6 IKEAIEAIKQGEMIIIMDDEDRENEGDLVMAGIFSSPQKINFMAQEARGLICVSITQELAQKLDLPPMV--QKNDSNHETAFTISIDAKEAKT-GISAFERDMTIRLMCESNTKPSDFVRPGHIFPLIAKEGGVLVRTGHTEASVDICRLAGVAPISVICEIMKKDGTMA 172          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_DEHMU (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Dehalospirillum multivorans GN=ribB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 80/178 (44.94%), Postives = 106/178 (59.55%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            + +AIEDIRQGK               L+ AA  +TP+ + F+  H  G++CV++  +   RL L  MV  K+ND    TAFT+TVDA+   T G+SA +R  T+  LA   S   +  RPGHIFPL  +EGG L R GHTE SVDL  LAG   +AV+CE++ +DG+MAR P L  F
Sbjct:   17 VNQAIEDIRQGKMVVMVDDEDRENEGDLVYAASFSTPQKVNFMASHAKGLICVAISKKIANRLQLEPMV--KKNDSSYETAFTITVDARTAAT-GISAGERDMTIKILADGGSHESELVRPGHIFPLIAKEGGALVRIGHTEGSVDLCRLAGQGDSAVICEIMKEDGTMARRPDLDIF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_CAMJE (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Campylobacter jejuni GN=ribB PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33
Identity = 79/181 (43.65%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F S+ +AI+D++ GK               LI  AQ +T E + F++K   G+VCV++     ++ +LPLMV +  ++ +  TAFT+TVDAK  TT GVSA +R  T+   A  ++K  DF RPGHI PL  ++GGVL+R GHTE +VDL  LAG   A V+CE+V D+G MAR   L  F
Sbjct:    3 FVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEKVNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHE--TAFTITVDAKDATT-GVSAYERNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACVICEIVKDNGDMARREDLEIF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTPL (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33
Identity = 78/181 (43.09%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            FS + +AIE IRQGK                I AA+ ATPE + F+  +G G++C  +  E  ++L+   MVA  +++ +  TAFTV+VD    T TG+SA +R+ T + +   ++K  DF RPGH+FPL  +EGGVL R GHTEA+VDLA LAG   A + CE++ DDG+M  +P L++F
Sbjct:    6 FSKVEDAIEAIRQGKIILVTDDEDRENEGDFICAAEFATPENINFMATYGKGLICTPISTEIAKKLNFHPMVAVNQDNHE--TAFTVSVD-HIDTGTGISAFERSITAMKIVDDNAKATDFRRPGHMFPLIAKEGGVLVRNGHTEATVDLARLAGLKHAGLCCEIMADDGTMMTMPDLQKF 183          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTP2 (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=ribBA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33
Identity = 78/181 (43.09%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            FS + +AIE IRQGK                I AA+ ATPE + F+  +G G++C  +  E  ++L+   MVA  +++ +  TAFTV+VD    T TG+SA +R+ T + +   ++K  DF RPGH+FPL  +EGGVL R GHTEA+VDLA LAG   A + CE++ DDG+M  +P L++F
Sbjct:    6 FSKVEDAIEAIRQGKIILVTDDEDRENEGDFICAAEFATPENINFMATYGKGLICTPISTEIAKKLNFHPMVAVNQDNHE--TAFTVSVD-HIDTGTGISAFERSITAMKIVDDNAKATDFRRPGHMFPLIAKEGGVLVRNGHTEATVDLARLAGLKHAGLCCEIMADDGTMMTMPDLQKF 183          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBB_VIBPA9.119e-3446.363,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBB_BUCBP9.119e-3439.333,4-dihydroxy-2-butanone 4-phosphate synthase OS=B... [more]
RIBBA_BACA29.119e-3442.22Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBB_RHORT1.191e-3344.003,4-dihydroxy-2-butanone 4-phosphate synthase OS=R... [more]
RIBB_CHLL21.191e-3343.263,4-dihydroxy-2-butanone 4-phosphate synthase OS=C... [more]
RIBB_HELHP1.556e-3344.713,4-dihydroxy-2-butanone 4-phosphate synthase OS=H... [more]
RIBB_DEHMU1.556e-3344.943,4-dihydroxy-2-butanone 4-phosphate synthase OS=D... [more]
RIBB_CAMJE2.032e-3343.653,4-dihydroxy-2-butanone 4-phosphate synthase OS=C... [more]
RIBBA_ACTPL2.032e-3343.09Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_ACTP22.032e-3343.09Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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