CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_WOLSU (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Wolinella succinogenes GN=ribB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.653e-33
Identity = 80/178 (44.94%), Postives = 107/178 (60.11%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            + EAIE I++G+               L+ AA  +TPE + F+V    G+VCV +     +RL L  MV  +EN+ +  TAFTV++DA+   +TG+SA +R  T+  +    SKP DF RPGHIFPL  +EGGVL R GHTE SVD+  LAG  P AV+CE++  DG MAR   L EF
Sbjct:    6 VREAIEAIKKGEMIIMMDDEDRENEGDLVYAAAFSTPEKVNFMVSEAKGLVCVCVTSTCSDRLGLAPMV--RENNSQHETAFTVSIDARE-CSTGISAFERDLTIRKMVDGTSKPEDFVRPGHIFPLIAKEGGVLVRTGHTEGSVDICKLAGVAPVAVICEIIKKDGHMARRDDLMEF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_VIBVY (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ribB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.653e-33
Identity = 70/151 (46.36%), Postives = 100/151 (66.23%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +I + +  T   MA +++  +GIVC+ +  E   +L+LP MV    +  +  TAFTV+++AK G TTGVSA+DR TT+ T A+  +K  D  RPGH+FPL+ R GGVL R GHTE +VDL  +AG  PA VLCE+ + DG+MA+ P++  F
Sbjct:   44 IIYSVEHLTNAQMALMIRECSGIVCLCLTDEHANKLELPPMVVNNNSANQ--TAFTVSIEAKQGVTTGVSAQDRVTTIKTAANPSAKADDLARPGHVFPLRARPGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_VIBVU (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio vulnificus GN=ribB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.653e-33
Identity = 70/151 (46.36%), Postives = 100/151 (66.23%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +I + +  T   MA +++  +GIVC+ +  E   +L+LP MV    +  +  TAFTV+++AK G TTGVSA+DR TT+ T A+  +K  D  RPGH+FPL+ R GGVL R GHTE +VDL  +AG  PA VLCE+ + DG+MA+ P++  F
Sbjct:   44 IIYSVEHLTNAQMALMIRECSGIVCLCLTDEHANKLELPPMVVNNNSANQ--TAFTVSIEAKQGVTTGVSAQDRVTTIKTAANPSAKADDLARPGHVFPLRARPGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAF 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_HELPY (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Helicobacter pylori GN=ribB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 73/171 (42.69%), Postives = 107/171 (62.57%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMAR 672
            + EA+E  + G+               L++A   +TPE + F+  H  G++CVS+  +  ++ +LP MV+  +++ +  TAFTV++DAK   T G+SA +R  T+  L    +KP DF RPGHIFPL  ++GGVL R GHTEASVDL  LAG  P +V+CE++ +DGSMAR
Sbjct:    6 VTEALEAYKNGEMLIVMDDEDRENEGDLVLAGIFSTPEKINFMATHARGLICVSLTKDLAKKFELPPMVSVNDSNHE--TAFTVSIDAKEART-GISAFERHLTIELLCKDTTKPSDFVRPGHIFPLIAKDGGVLARTGHTEASVDLCKLAGLKPVSVICEIMKEDGSMAR 173          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_HELPJ (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Helicobacter pylori J99 GN=ribB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 73/171 (42.69%), Postives = 106/171 (61.99%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMAR 672
            + EA+E  + G+               L++A   +TPE + F+  H  G++CVS+  +   + +LP MV+  +++ +  TAFTV++DAK   T G+SA +R  T+  L    +KP DF RPGHIFPL  ++GGVL R GHTEASVDL  LAG  P +V+CE++ +DGSMAR
Sbjct:    6 VTEALEAYKNGEMLIVMDDEDRENEGDLVLAGIFSTPEKINFMATHARGLICVSLTKDLANKFELPPMVSVNDSNHE--TAFTVSIDAKEAKT-GISAFERHLTIELLCKDTTKPSDFVRPGHIFPLIAKDGGVLARTGHTEASVDLCKLAGLKPVSVICEIMKEDGSMAR 173          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_DESPS (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Desulfotalea psychrophila GN=ribB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 71/178 (39.89%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            + ++++ +RQG+               LI +A+  T + MA +++ G+GIVC+ + GE ++ L LP MV    N+ +  T FT++++A+ G TTGVSA DR  TV    +  +   D  +PGH+FPL+ R+ GVL R GHTE +VDL  L+G  PA +LCE+ + DG+MARLP++ +F
Sbjct:   16 VEKSLQALRQGEGVLLVDDEDRENEGDLIYSAEHLTAKQMALMIREGSGIVCLCLTGEKVDELKLPQMVTN--NNSRHGTGFTISIEARDGVTTGVSAADRTQTVKAAIAEGAVAEDLCQPGHVFPLRARDNGVLDRRGHTEGTVDLMKLSGLAPAGLLCELTNVDGTMARLPEIVDF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTP7 (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ribBA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 77/181 (42.54%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            FS + +AIE IRQGK                I AA+ ATPE + F+  +G G++C  +  E  ++L+   MVA  +++ +  TAFTV+VD    T TG+SA +R+ T + +   ++K  DF RPGH+FPL  ++GGVL R GHTEA+VDLA LAG   A + CE++ DDG+M  +P L++F
Sbjct:    6 FSKVEDAIEAIRQGKIILVTDDEDRENEGDFICAAEFATPENINFMATYGKGLICTPISTEIAKKLNFHPMVAVNQDNHE--TAFTVSVD-HIDTGTGISAFERSITAMKIVDDNAKATDFRRPGHMFPLIAKDGGVLVRNGHTEATVDLARLAGLKHAGLCCEIMADDGTMMTMPDLQKF 183          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_OCEIH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Oceanobacillus iheyensis GN=ribB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.317e-32
Identity = 77/177 (43.50%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            S I +AIED+R GK               L+  ++  TPE + F+ K+G G++CV +  E    LDL  M     N +   T FTV+VD  +  +TG+S  DRA T+  LA   SK  DF RPGH+FPL  +  GVL+R GHTEA+VDLA L+   P+A +CE+++DDG+MAR P L
Sbjct:    5 SKIEQAIEDLRNGKLIIVADDADREAEGDLVGLSEFVTPEKVNFMTKYGRGLICVPITEERALELDLHAMATN--NTDTYGTQFTVSVDY-YTNSTGISTADRADTIRALAEPLSKAADFKRPGHMFPLIAKNAGVLERRGHTEAAVDLARLSNSIPSAYICEILNDDGTMARYPAL 178          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_DESAH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=ribB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.317e-32
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            LI  A   T E +A +++  +GI+C+ +  E +E+L LP MV    N     TAFT++++A  G TTGVSA DRATT+   A+ D++P D + PGH+FPL+  E GVL R GHTE +VDL  LAG  PA VLCE+ + DG+MARLP++  F
Sbjct:   43 LIFPAGNITAEQVALLIRECSGIICLCLPPERIEQLGLPQMVTC--NTSAYQTAFTISIEAAEGVTTGVSAADRATTIRCAAALDARPEDIHSPGHVFPLRAVEQGVLGRRGHTEGTVDLMRLAGLAPAGVLCELTNVDGTMARLPQIITF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_PROVI (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ribBA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.317e-32
Identity = 79/177 (44.63%), Postives = 103/177 (58.19%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA-KHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            +I  A+EDI QGK                I AA   T E + FI K   G++CV++  +  + L L  MV +  +  +  T FTV+VDA   G TTG+S  DRA T+  L    S    F+RPGHIFPL+  +GGVL+R GHTEA+VDLA LAG  P  +LCE++ +DGSMARL  L
Sbjct:    8 TIESALEDIGQGKLVIVIDDEERENEGDFIAAADKVTTEMINFITKEARGLLCVAVTMDRAKELQLEPMVQRNTSQHE--TNFTVSVDAIAEGVTTGISVYDRAMTIKMLGDETSHADSFSRPGHIFPLRAMDGGVLRRVGHTEAAVDLARLAGCSPVGLLCEILHEDGSMARLADL 182          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBB_WOLSU2.653e-3344.943,4-dihydroxy-2-butanone 4-phosphate synthase OS=W... [more]
RIBB_VIBVY2.653e-3346.363,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBB_VIBVU2.653e-3346.363,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBB_HELPY3.465e-3342.693,4-dihydroxy-2-butanone 4-phosphate synthase OS=H... [more]
RIBB_HELPJ4.526e-3342.693,4-dihydroxy-2-butanone 4-phosphate synthase OS=H... [more]
RIBB_DESPS4.526e-3339.893,4-dihydroxy-2-butanone 4-phosphate synthase OS=D... [more]
RIBBA_ACTP74.526e-3342.54Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBB_OCEIH1.317e-3243.503,4-dihydroxy-2-butanone 4-phosphate synthase OS=O... [more]
RIBB_DESAH1.317e-3248.343,4-dihydroxy-2-butanone 4-phosphate synthase OS=D... [more]
RIBBA_PROVI1.317e-3244.63Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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