CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTPJ (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=ribBA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.831e-32
Identity = 76/181 (41.99%), Postives = 111/181 (61.33%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            FS + +AIE IRQGK                I AA+ ATPE + F+  +G G++C  +  E  ++L+   MVA  +++ +  TAFTV+VD    T TG+SA +R+ T + +   ++K  DF  PGH+FPL  ++GGVL R GHTEA+VDLA LAG   A + CE++ DDG+M  +P L++F
Sbjct:    6 FSKVEDAIEAIRQGKIILVTDDEDRENEGDFICAAEFATPENINFMATYGKGLICTPISTEIAKKLNFHPMVAVNQDNHE--TAFTVSVD-HIDTGTGISAFERSITAMKIVDDNAKATDFRCPGHMFPLIAKDGGVLVRNGHTEATVDLARLAGLKHAGLCCEIMADDGTMMTMPDLQKF 183          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_VIBFI (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio fischeri GN=ribB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 71/175 (40.57%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            + +AI+ ++QG                LI +    T E MA +++  +GIVC+ +  +  + L+L  MV   E+  +  TAFT++++AK G TTGVSA DR TT+ T     + P +  +PGH+FPL+ ++GGVL R GHTE +VDL  LA   PA VLCEV + DGSMA+ P++
Sbjct:   19 VEQAIKSVQQGNGVLLLDDESRENEGDLIYSVDHLTSEQMALMIRSCSGIVCLCLTEDKADYLELSPMVEHNESVNQ--TAFTISIEAKKGVTTGVSATDRVTTIKTACKNGALPHELAKPGHVFPLRAKDGGVLTRRGHTEGTVDLMRLAELTPAGVLCEVTNSDGSMAKTPEI 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_RALEJ (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ribB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.535e-32
Identity = 74/178 (41.57%), Postives = 110/178 (61.80%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            I +A++ +R+G+               LI+AA+  TP  MA +++  +GIVC+ +  + + +L L  MV  + N  +  TAFTV+++A+ G TTGVSA DR TT+    ++D+       PGH+FPL   +GGVL R GHTE SV+LA +AG  PAAVLCE+++ DG+MAR P+   F
Sbjct:   26 IAQALDAMREGRPVVLLDDDDRENEADLILAAECLTPSNMAMMIRECSGIVCLCLTTDKVRQLGLRPMV--ENNRSQYGTAFTVSIEAREGVTTGVSAVDRITTIRAAIAKDAGTDAVVSPGHVFPLVAVDGGVLVRRGHTEGSVELARMAGLSPAAVLCELMNPDGTMARRPEALSF 201          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_METLZ (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=ribB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 71/178 (39.89%), Postives = 109/178 (61.24%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            F++I EA++ ++ G+               LI AA+ AT E + F+ K+G G++C+ M    +E+L LP MV +  ++ +  TAFTV++D    TTTG+SA +R  T       +++P DF RPGH+FPL+ ++ GV +R GHTEA+VDL  LAG   A + CE++ D+G M R P+L
Sbjct:    4 FNTIEEALKSLQNGEMIIVTDDENRENEGDLICAAEYATTENVNFMAKYGRGLICMPMGRSLVEKLCLPPMVLKNTDNHE--TAFTVSIDHVD-TTTGISAVERGITARKCIDPNARPEDFRRPGHMFPLQAKDNGVFEREGHTEATVDLMKLAGLREAGLCCEIMADNGEMMRTPEL 178          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PSEPK (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=ribB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 73/174 (41.95%), Postives = 101/174 (58.05%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMAR 672
            F ++  AI   + G+               +I AA+  T + MA +++  +GIVC+ +    ++ L L  MV  + N  +  T FTVT++A  G TTGVSA+DR TT+       ++      PGH+FPL+ R GGVL R GHTE SVDLA LAG  PAAVLCE+++ DGSMAR
Sbjct:    9 FPNVSAAIAAFQAGRPVLLLDDDDREDEADIIAAAENITLQTMAMMIRDCSGIVCLCLDEATVDELQLAPMV--QNNQARHGTGFTVTIEAAEGITTGVSAQDRITTIDAALRSSAEQRHIVSPGHVFPLRARNGGVLTRRGHTEGSVDLARLAGLRPAAVLCELMNPDGSMAR 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAES (Riboflavin biosynthesis protein ribBA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ribBA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 71/181 (39.23%), Postives = 102/181 (56.35%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  AIE +R G+               L+   +      + F+ K G G++C  +     ERL L  M  ++ N +   T FTV++D  + TTTG+SA +R  T   L   ++ P DF+RPGH+FPL  +E GVL R GHTEA+VDLA L G  PA V+CE+++DDG+MA+   L+ F
Sbjct:    3 FDTIELAIEALRNGESIIVVDDEDRENEGDLVAVTEWMDDNTINFMAKEGRGLICAPIDKSIAERLKLQSM--EQNNTDIYGTHFTVSID-HYKTTTGISAHERTQTARALIDENTNPEDFHRPGHLFPLIAKENGVLTRNGHTEAAVDLARLTGAQPAGVICEIMNDDGTMAKGEDLQSF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAEQ (Riboflavin biosynthesis protein ribBA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ribBA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 70/181 (38.67%), Postives = 102/181 (56.35%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  AIE +R G+               L+   +      + F+ + G G++C  +     ERL L  M  ++ N +   T FTV++D  + TTTG+SA +R  T   L   ++ P DF+RPGH+FPL  +E GVL R GHTEA+VDLA L G  PA V+CE+++DDG+MA+   L+ F
Sbjct:    3 FDTIELAIEALRNGESIIVVDDEDRENEGDLVAVTEWMDDNTINFMAREGRGLICAPIDKSIAERLKLQSM--EQNNTDIYGTHFTVSID-HYKTTTGISAHERTQTARALIDENTNPEDFHRPGHLFPLIAKENGVLTRNGHTEAAVDLARLTGAQPAGVICEIMNDDGTMAKGEDLQSF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAS1 (Riboflavin biosynthesis protein ribBA OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ribBA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 68/179 (37.99%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            SI  A++ +++G+               L+   +      + F+  +G G++C  +     E+LDL  MV    N +   T FTV+VD    TTTG+SA +R  T   L    +   DFN+PGH+FPL  ++ GVL R GHTEASVDLA L G  PAA++CE++D+DG+MA+   L  F
Sbjct:    5 SIDTALQALKKGESIIVVDDENRENEGDLVAVTEWMNDNTVNFMATYGKGLICAPISNAIAEKLDLNPMVTH--NSDVYGTQFTVSVDHIQ-TTTGISADERTMTARALIDEQATGSDFNKPGHLFPLIAQDNGVLSRRGHTEASVDLAKLTGAKPAALICEIMDEDGTMAKGASLEAF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_RALSO (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Ralstonia solanacearum GN=ribB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 68/144 (47.22%), Postives = 90/144 (62.50%), Query Frame = 1
Query:  241 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMAR 672
            LI+AA   T   MA +++  +GIVC+ +  E    L L  MV  + N  +  TAFTV+++A+ G +TGVSA DR TT+    + D+       PGH+FPL  + GGVL R GHTE SVDLA LAG  PA VLCE++  DG+MAR
Sbjct:   51 LIIAADRLTHAGMAMLIRECSGIVCLCLTAEKAAVLGLRPMV--EHNRSQYGTAFTVSIEARVGVSTGVSAADRITTIRAAVAPDADAQSVVSPGHVFPLVAQAGGVLARRGHTEGSVDLARLAGLSPAGVLCELMLPDGTMAR 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAW (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MW2) GN=ribBA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  A+  ++ G+               L+   +      + F+ K   G++C  +  +  +RLDL  MV   +N +   T FTV++D    TTTG+SA +R  T   L    S+  DFNRPGH+FPL  ++ GVL R GHTEA+VDLA L G  PA V+CE+++DDG+MA+   L++F
Sbjct:    3 FDNIDSALMALKNGETIIVVDDENRENEGDLVAVTEWMNDNTINFMAKEARGLICAPVSKDIAQRLDLVQMV--DDNSDIFGTQFTVSIDHVD-TTTGISAYERTLTAKKLIDPSSEAKDFNRPGHLFPLVAQDKGVLARNGHTEAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKF 180          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBBA_ACTPJ3.831e-3241.99Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBB_VIBFI6.535e-3240.573,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBB_RALEJ8.535e-3241.573,4-dihydroxy-2-butanone 4-phosphate synthase OS=R... [more]
RIBB_METLZ1.610e-3039.893,4-dihydroxy-2-butanone 4-phosphate synthase OS=M... [more]
RIBB_PSEPK2.324e-2941.953,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBBA_STAES3.036e-2939.23Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAEQ6.763e-2938.67Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAS19.766e-2837.99Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBB_RALSO2.176e-2747.223,4-dihydroxy-2-butanone 4-phosphate synthase OS=R... [more]
RIBBA_STAAW2.176e-2737.57Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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