CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAS (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MSSA476) GN=ribBA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  A+  ++ G+               L+   +      + F+ K   G++C  +  +  +RLDL  MV   +N +   T FTV++D    TTTG+SA +R  T   L    S+  DFNRPGH+FPL  ++ GVL R GHTEA+VDLA L G  PA V+CE+++DDG+MA+   L++F
Sbjct:    3 FDNIDSALMALKNGETIIVVDDENRENEGDLVAVTEWMNDNTINFMAKEARGLICAPVSKDIAQRLDLVQMV--DDNSDIFGTQFTVSIDHVD-TTTGISAYERTLTAKKLIDPSSEAKDFNRPGHLFPLVAQDKGVLARNGHTEAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAR (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MRSA252) GN=ribBA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  A+  ++ G+               L+   +      + F+ K   G++C  +  +  +RLDL  MV   +N +   T FTV++D    TTTG+SA +R  T   L    S+  DFNRPGH+FPL  ++ GVL R GHTEA+VDLA L G  PA V+CE+++DDG+MA+   L++F
Sbjct:    3 FDNIDSALMALKNGETIIVVDDENRENEGDLVAVTEWMNDNTINFMAKEARGLICAPVSKDIAQRLDLVQMV--DDNSDIFGTQFTVSIDHVD-TTTGISAYERTLTAKKLIDPSSEAKDFNRPGHLFPLVAQDKGVLARNGHTEAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAN (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain N315) GN=ribBA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27
Identity = 68/181 (37.57%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  A+  ++ G+               L+   +      + F+ K   G++C  +  +  +RLDL  MV   +N +   T FTV++D    TTTG+SA +R  T   L    S+  DFNRPGH+FPL  ++ GVL R GHTEA+VDLA L G  PA V+CE+++DDG+MA+   L+ F
Sbjct:    3 FDNIDSALMALKNGETIIVVDDENRENEGDLVAVTEWMNDNTINFMAKEARGLICAPVSKDIAQRLDLVQMV--DDNSDIFGTQFTVSIDHVD-TTTGISAYERTLTAKKLIDPSSEAKDFNRPGHLFPLVAQDKGVLARNGHTEAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQNF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAM (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ribBA PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27
Identity = 68/181 (37.57%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  A+  ++ G+               L+   +      + F+ K   G++C  +  +  +RLDL  MV   +N +   T FTV++D    TTTG+SA +R  T   L    S+  DFNRPGH+FPL  ++ GVL R GHTEA+VDLA L G  PA V+CE+++DDG+MA+   L+ F
Sbjct:    3 FDNIDSALMALKNGETIIVVDDENRENEGDLVAVTEWMNDNTINFMAKEARGLICAPVSKDIAQRLDLVQMV--DDNSDIFGTQFTVSIDHVD-TTTGISAYERTLTAKKLIDPSSEAKDFNRPGHLFPLVAQDKGVLARNGHTEAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQNF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAC (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain COL) GN=ribBA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  A+  ++ G+               L+   +      + F+ K   G++C  +  +  +RLDL  MV   +N +   T FTV++D    TTTG+SA +R  T   L    S+  DFNRPGH+FPL  ++ GVL R GHTEA+VDLA L G  PA V+CE+++DDG+MA+   L++F
Sbjct:    3 FDNIDSALMALKNGEPIIVVDDENRENEGDLVAVTEWMNDNTINFMAKEARGLICAPVSKDIAQRLDLVQMV--DDNSDIFGTQFTVSIDHVD-TTTGISAYERTLTAKKLIDPSSEAKDFNRPGHLFPLVAQDKGVLARNGHTEAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_STAHJ (Riboflavin biosynthesis protein ribBA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ribBA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 69/182 (37.91%), Postives = 103/182 (56.59%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTT-TGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  I +A+  +++G+               L+   Q      + F+ K G G++C  +  +DL  L   LM   + N +   T FTV++D  H TT TG+SA DR  T   L + +S P DF++PGH+FPL  +E GVL+R GHTEA+VDLA L    PA V+CE++++DG+MA+  +L  F
Sbjct:    3 FDEIKDALNALKRGESIIVVDDEDRENEGDLVAITQWMNDNTINFMAKEGRGLICAPIS-KDLA-LKFNLMPMVEHNTDGFGTNFTVSID--HATTSTGISAFDRMATARALINPESTPEDFHKPGHLFPLIAKENGVLERTGHTEAAVDLAKLTKAAPAGVICEIMNEDGTMAKGEQLEAF 180          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_METTH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Methanobacterium thermoautotrophicum GN=ribB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKEN------------------DEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS-----RDSKPGD-FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDD 654
            I EA++ +R+G+               +I+AA+   PE +  +     G++CV +  E+ E+L +P M    E                   DEK  +AF++TV+ +  T TG++  DRA T+  LA      R    GD F  PGH+  L+  +G VL+R GHTE S+ L  +AG    AV CE++DD
Sbjct:    7 IQEALKALRRGEIVLVFDADNRERETDMIVAAEKIKPEHIRIMRNDAGGLICVPVSWENSEKLGIPYMTDIMEEASGRYPVLGKLSPHDIPYDEK--SAFSITVNHRK-TFTGITDNDRALTIGELAGICRDDRHESFGDLFRSPGHVTLLRAADGHVLRRGGHTEMSIALMEMAGLTGVAVCCEMMDD 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_METJA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Methanocaldococcus jannaschii GN=ribB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 57/194 (29.38%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMV------AQKEN------------DEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS--RDSKPGDFNR----PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGS 663
            +++ +AIE +++G+               +++A+Q  TPE +  + K   G++C ++  +   +L +P MV      +QK              DEK  ++F++T++ +  T TG++  DRA T+  LA   ++ +  DF +    PGH+  L+  EG V  R GHTE +V LA LA   P   +CE++ DDG+
Sbjct:    2 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEK--SSFSITINHRK-TFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGN 192          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_METAC (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Methanosarcina acetivorans GN=ribB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 55/200 (27.50%), Postives = 91/200 (45.50%), Query Frame = 1
Query:  148 GFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLM----------------VAQKENDEKLCTAFTVTVDAKH-GTTTGVSARDRATTVLTLASRDSKP---------GDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMA 669
            G  +I  A+E +R GK               L++ A+  T + + ++ K   G++CV++     ++L LP M                V +K+ D K  +  + ++   H  T TG+   +RA T+  +     K           +F  PGH+  L+  EG + +R G TE SV LA +AG  PA V+CE++DD+   A
Sbjct:   13 GNENINRALEVLRAGKMIQIYDSDSREGETDLVIPAKAVTYKDVKWMRKDAGGLICVAVDPVASKQLKLPFMADLVREASRTSESLGEVVEKDGDLKYDSHSSFSIWVNHRDTRTGIPDLERALTIRKIGEITEKSLSGNGIRFGNEFRTPGHVALLRAAEGLLDERMGQTELSVALARMAGITPAMVVCEMLDDESGRA 212          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_METMA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Methanosarcina mazei GN=ribB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 56/197 (28.43%), Postives = 91/197 (46.19%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLM----------------VAQKENDEKLCTAFTVTVDAKH-GTTTGVSARDRATTVLTLA--SRDSKPG-------DFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMA 669
            +I  A+E +R GK               L++ A+  T   + ++ K   G++CV++     ++L LP M                V +K+ D K     + ++   H  T TG+   +RA T+  +   + +S  G       +F  PGH+  L+  EG + +R G TE SV LA +AG  PA V+CE++DDD   A
Sbjct:   16 NINRALEALRAGKMIQIYDSDSREGETDLVIPAKAVTYTDVKWMRKDAGGLICVAVDPVASKQLKLPFMADLVREASKTSDSLGEVVEKDGDLKYDAHSSFSLWVNHRDTRTGIPDIERALTIRKIGEITEESLSGNGVRFGNEFRTPGHVALLRAAEGLLDERMGQTELSVALARMAGITPAMVVCEMLDDDSGKA 212          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBBA_STAAS2.176e-2737.57Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAR2.176e-2737.57Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAN2.841e-2737.57Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAM2.841e-2737.57Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAC3.711e-2737.57Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAHJ1.410e-2637.91Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBB_METTH1.728e-1632.283,4-dihydroxy-2-butanone 4-phosphate synthase OS=M... [more]
RIBB_METJA5.027e-1629.383,4-dihydroxy-2-butanone 4-phosphate synthase OS=M... [more]
RIBB_METAC3.983e-1327.503,4-dihydroxy-2-butanone 4-phosphate synthase OS=M... [more]
RIBB_METMA1.514e-1228.433,4-dihydroxy-2-butanone 4-phosphate synthase OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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