CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig688 contig Ccv1_Contig688:435..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_THEMA (Riboflavin biosynthesis protein ribBA OS=Thermotoga maritima GN=ribBA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 51/148 (34.46%), Postives = 76/148 (51.35%), Query Frame = 1 
Query:  244 IMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVT--VDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGV--LKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARL 675
            +  AQL T + ++F V +G G+ CV+   EDL           K    KL + +     V    GT TG+SA +RA T   LA       +F  PGH+  +    GG+   +R GHTEAS++++ LAGF   AV+ E++D+ G+   L
Sbjct:   28 VFPAQLITEDVVSFFVTYGKGLFCVTADEEDL----------LKRGFVKLSSNYGANYFVPVDWGTGTGISALERAETCRKLAE-GRYFHEFRYPGHVTVI----GGIGFQRRKGHTEASLEISELAGFSRHAVIVEILDEKGNSHNL 160
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBBA_THEMA7.512e-1234.46Riboflavin biosynthesis protein ribBA OS=Thermotog... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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