CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ECOLU (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ribB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 84/181 (46.41%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    + D+KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EF
Sbjct:   13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADDAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_UNCTG (Riboflavin biosynthesis protein ribBA OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ribBA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 87/181 (48.07%), Postives = 124/181 (68.51%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F+SI +A++DI+ G+               LI AA+ A+PE + F+ K+  G++CV MK E L+ L++  MV +K  ++K C+ FTV+VD K GTTTG+SA DR+ TV  L  + +K  DF RPGHIFPL+ +EGGVL R GHTEA+VDL  LAGF PA ++CE++++DG+MAR+  L +F
Sbjct:    6 FASIGDAVKDIKVGRMVIVVDDPGRENEGDLICAAEKASPEVINFMTKYARGLICVPMKHERLKELEIENMV-EKPTEKKGCS-FTVSVDYKIGTTTGISAYDRSVTVRKLIDKTAKHEDFARPGHIFPLRCKEGGVLARTGHTEAAVDLVRLAGFYPAGIICEIMNNDGTMARMSDLIKF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SERP5 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Serratia proteamaculans (strain 568) GN=ribB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.716e-40
Identity = 81/175 (46.29%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            +  A+E +R G+               +I AA+  T E MA  ++HG+GIVC+ +  E  ++L+LP+MV    N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEA++DL  +AGF PA VLCE+ +DDGSMA  P++
Sbjct:   16 VERALEALRNGRGVMVLDDENRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRQQLELPMMVTN--NSSQFQTAFTVTIEAAQGVTTGVSASDRLTTIRAAVADNAKPSDLNRPGHVFPLRAQPGGVLSRRGHTEATIDLVSMAGFKPAGVLCELTNDDGSMAHAPEV 188          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ENT38 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Enterobacter sp. (strain 638) GN=ribB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 83/178 (46.63%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A++ +R+G+               +I AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV  + N     T FTVT++A HG TTGVSA DR TTV    +  +KP D +RPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   16 VEHALDALREGRGVMVLDDEHRENEGDMIFAAENMTVEQMALTIRHGSGIVCLCINEERRKQLDLPMMV--ENNTSAFGTGFTVTIEAAHGVTTGVSAADRLTTVRAAIADGAKPSDLHRPGHVFPLRAQAGGVLTRGGHTEATLDLVTLAGFKPAGVLCELTNDDGTMARAPECVTF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNY3 (Riboflavin biosynthesis protein ribBA OS=Synechocystis sp. (strain PCC 6803) GN=ribBA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 88/183 (48.09%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKH--GTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I  A+ DI+ GK               LI AAQ ATP  + F+     G++C++M G+ L+ LDLPLMV++  +  +  TAFTV++DA    G TTG+SA DRA T+    +  ++P D +RPGHIFPL+ + GGVLKRAGHTEA+VDL+ LAG  PA V+CE+ + DGSMARLP+L E+
Sbjct:    2 FDAIDAALADIKAGKAVVVVDDENRENEGDLICAAQFATPALVNFMAVEARGLICLAMTGDRLDELDLPLMVSKNTDSNQ--TAFTVSIDAAPHLGVTTGISAEDRARTIQIAINPVTRPEDLSRPGHIFPLRAKTGGVLKRAGHTEAAVDLSRLAGLYPAGVICEIQNADGSMARLPELVEY 182          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_SALTO (Riboflavin biosynthesis protein ribBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 85/181 (46.96%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I +A+ +I  G+               LI AA+LATPE +AF+V++ +G +C S+  +D +RLDLP M     N ++  TA+ VTVDA+ G +TG+SA DRA  +  LA   + P D  RPGH+ PL+ REGGVL+R GHTEA+ DL  LAG  PA VLCE+V+DDG+M R+P L  F
Sbjct:    4 FGTIEQAMAEILAGRPVVVVDDANRENEGDLIFAAELATPELVAFMVRYTSGYICASLTEDDCDRLDLPPM--HHTNQDRRGTAYMVTVDARKGVSTGISAADRARVIRLLADPSTTPDDLARPGHVVPLRAREGGVLRRTGHTEAATDLTRLAGLRPAGVLCELVNDDGTMMRVPDLERF 182          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ECOUT (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=ribB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EF
Sbjct:   13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITDDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ECOL6 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli O6 GN=ribB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EF
Sbjct:   13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITDDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ECOK1 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli O1:K1 / APEC GN=ribB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EF
Sbjct:   13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITDDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ECO81 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli O81 (strain ED1a) GN=ribB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EF
Sbjct:   13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITDDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEF 191          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBB_ECOLU5.897e-4146.413,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_UNCTG1.006e-4048.07Riboflavin biosynthesis protein ribBA OS=Unculture... [more]
RIBB_SERP51.716e-4046.293,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_ENT382.241e-4046.633,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_SYNY32.241e-4048.09Riboflavin biosynthesis protein ribBA OS=Synechocy... [more]
RIBBA_SALTO2.241e-4046.96Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBB_ECOUT2.927e-4045.863,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBB_ECOL62.927e-4045.863,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBB_ECOK12.927e-4045.863,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBB_ECO812.927e-4045.863,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
back to top