CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig688 contig Ccv1_Contig688:435..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ECO24 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ribB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EF
Sbjct:   13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_SALAI (Riboflavin biosynthesis protein ribBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 84/181 (46.41%), Postives = 118/181 (65.19%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F +I +A+ +I  G+               LI AA+LATPE +AF+V++ +G +C  +  ++ +RLDLP M     N ++  TA+TVTVDA+ G +TG+SA DRA T+  LA   + P D  RPGH+ PL+ R+GGVL+R GHTEA++DL  LAG  PA VLCE+V+DDG+M R+P L  F
Sbjct:    4 FGTIEQAMAEIVAGRPVVVVDDANRENEGDLIFAAELATPELVAFMVRYTSGYICAPLTEDECDRLDLPPM--HHTNQDRRGTAYTVTVDAREGVSTGISAADRAHTIRLLADPRTGPADLARPGHVVPLRARQGGVLRRPGHTEAAIDLTRLAGLRPAGVLCELVNDDGTMMRVPDLERF 182          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCQ (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain Q1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 88/178 (49.44%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            F  I EA+ED++QGK                I  A+  TPE + F++ HG G+VCV +     ERL L  MVA   N +   TAFTV++D    TTTG+SA +RATT+  + +  SK  DFNRPGHIFPL  +EGGVL+RAGHTEA+VDLA L G +PA V+CE++++DG+MAR+P L
Sbjct:    2 FHRIEEALEDLKQGKVVIVCDDENRENEGDFIALAEYITPETINFMITHGRGLVCVPITEGYAERLQLEPMVAH--NTDSHHTAFTVSIDHV-STTTGISAHERATTIREMLNPASKGADFNRPGHIFPLIAKEGGVLRRAGHTEAAVDLAQLCGAEPAGVICEIINEDGTMARVPDL 176          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC7 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain AH187) GN=ribBA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 88/178 (49.44%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            F  I EA+ED++QGK                I  A+  TPE + F++ HG G+VCV +     ERL L  MVA   N +   TAFTV++D    TTTG+SA +RATT+  + +  SK  DFNRPGHIFPL  +EGGVL+RAGHTEA+VDLA L G +PA V+CE++++DG+MAR+P L
Sbjct:    2 FHRIEEALEDLKQGKVVIVCDDENRENEGDFIALAEYITPETINFMITHGRGLVCVPITEGYAERLQLEPMVAH--NTDSHHTAFTVSIDHV-STTTGISAHERATTIREMLNPASKGADFNRPGHIFPLIAKEGGVLRRAGHTEAAVDLAQLCGAEPAGVICEIINEDGTMARVPDL 176          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC1 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ATCC 10987) GN=ribBA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 88/178 (49.44%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            F  I EA+ED++QGK                I  A+  TPE + F++ HG G+VCV +     ERL L  MVA   N +   TAFTV++D    TTTG+SA +RATT+  + +  SK  DFNRPGHIFPL  +EGGVL+RAGHTEA+VDLA L G +PA V+CE++++DG+MAR+P L
Sbjct:    2 FHRIEEALEDLKQGKVVIVCDDENRENEGDFIALAEYITPETINFMITHGRGLVCVPITEGYAERLQLEPMVAH--NTDSHHTAFTVSIDHV-STTTGISAHERATTIREMLNPASKGADFNRPGHIFPLIAKEGGVLRRAGHTEAAVDLAQLCGAEPAGVICEIINEDGTMARVPDL 176          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ESCF3 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ribB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.992e-40
Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+  EF
Sbjct:   13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTIEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_RHOE4 (Riboflavin biosynthesis protein ribBA OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ribBA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.992e-40
Identity = 89/183 (48.63%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            F SI  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G+D +RL LP M A   N +K  TA+TVTVDA+ G  TG+SA DRA T+  LA+ +S   DF RPGH+ PL+ +EGGVL+R GHTEA+VDLA +A   PA V+CE+V   D+G+MA+  +LR F
Sbjct:    4 FDSIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLDGDDCDRLGLPPMYAT--NQDKHGTAYTVTVDAREGIGTGISASDRAATMRLLANPESGANDFTRPGHVVPLRAKEGGVLRRPGHTEAAVDLARMADLRPAGVICEIVSQKDEGAMAQTDELRVF 184          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACHK (Riboflavin biosynthesis protein ribBA OS=Bacillus thuringiensis subsp. konkukian GN=ribBA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.992e-40
Identity = 88/178 (49.44%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            F  I EA+ED++QGK                I  A+  TPE + F++ HG G+VCV +     ERL L  MV+   N +   TAFTV++D    TTTG+SA +RATT+  L +  SK  DFNRPGHIFPL  +EGGVL+RAGHTEA+VDLA L G +PA V+CE++++DG+MAR+P L
Sbjct:    2 FHRIEEALEDLKQGKVVIVCDDENRENEGDFIALAEYITPETINFMITHGRGLVCVPITEGYAERLQLEPMVSH--NTDSHHTAFTVSIDHV-STTTGISAHERATTIQQLLNPASKGADFNRPGHIFPLIAKEGGVLRRAGHTEAAVDLAQLCGAEPAGVICEIINEDGTMARVPDL 176          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCZ (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ZK / E33L) GN=ribBA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.992e-40
Identity = 88/178 (49.44%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            F  I EA+ED++QGK                I  A+  TPE + F++ HG G+VCV +     ERL L  MV+   N +   TAFTV++D    TTTG+SA +RATT+  L +  SK  DFNRPGHIFPL  +EGGVL+RAGHTEA+VDLA L G +PA V+CE++++DG+MAR+P L
Sbjct:    2 FHRIEEALEDLKQGKVVIVCDDENRENEGDFIALAEYITPETINFMITHGRGLVCVPITEGYAERLQLEPMVSH--NTDSHHTAFTVSIDHV-STTTGISAHERATTIQQLLNPASKGADFNRPGHIFPLIAKEGGVLRRAGHTEAAVDLAQLCGAEPAGVICEIINEDGAMARVPDL 176          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC3 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain 03BB102) GN=ribBA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.992e-40
Identity = 88/178 (49.44%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 684
            F  I EA+ED++QGK                I  A+  TPE + F++ HG G+VCV +     ERL L  MV+   N +   TAFTV++D    TTTG+SA +RATT+  L +  SK  DFNRPGHIFPL  +EGGVL+RAGHTEA+VDLA L G +PA V+CE++++DG+MAR+P L
Sbjct:    2 FHRIEEALEDLKQGKVVIVCDDENRENEGDFIALAEYITPETINFMITHGRGLVCVPITEGYAERLQLEPMVSH--NTDSHHTAFTVSIDHV-STTTGISAHERATTIQQLLNPASKGADFNRPGHIFPLIAKEGGVLRRAGHTEAAVDLAQLCGAEPAGVICEIINEDGTMARVPDL 176          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBB_ECO243.822e-4045.863,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_SALAI3.822e-4046.41Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_BACCQ3.822e-4049.44Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC73.822e-4049.44Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC13.822e-4049.44Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBB_ESCF34.992e-4045.863,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_RHOE44.992e-4048.63Riboflavin biosynthesis protein ribBA OS=Rhodococc... [more]
RIBBA_BACHK4.992e-4049.44Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACCZ4.992e-4049.44Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC34.992e-4049.44Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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