CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SALHS (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella heidelberg (strain SL476) GN=ribB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 82/181 (45.30%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV       +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SALG2 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ribB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 82/181 (45.30%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV       +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SALEP (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=ribB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 82/181 (45.30%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV       +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SALDC (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella dublin (strain CT_02021853) GN=ribB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 82/181 (45.30%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV       +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SALCH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella choleraesuis GN=ribB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 82/181 (45.30%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV       +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_SALA4 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Salmonella agona (strain SL483) GN=ribB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 82/181 (45.30%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A++ +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV       +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PHOLL (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=ribB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.478e-39
Identity = 83/178 (46.63%), Postives = 113/178 (63.48%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI  +R GK               +I AA+  T E MA  +++G+GIVC+ +  E  ++L LP+MV  + N     TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDGSMAR  ++ +F
Sbjct:   16 VEHAINALRDGKGVMVLDNEDRENEGDIIFAAETMTVEQMALTIRYGSGIVCLCLTEERRQQLQLPMMV--ENNSSPFQTAFTVTIEAAQGVTTGVSAADRITTIRAAIADNAKPSDLNRPGHVFPLRAQPGGVLVRQGHTEAAIDLVSLAGFKPAGVLCELTNDDGSMARTLEVVQF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_WIGBR (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Wigglesworthia glossinidia brevipalpis GN=ribB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 80/178 (44.94%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A++ +++G                +I AA+  T   MA  ++ G+GIVC+ +  E  + L+LP+MV  K+N+ K  TAFTV++++ +G TTGVSA DR  T+ T    ++KP D NRPGH+FPL+   GG+L RAGHTEA+VDL  LAG  PA V+CEV++DDGSMAR+P++  F
Sbjct:   16 VKNALQSLKRGNGILVLDDENRENEGDMIFAAENMTVNQMALAIRFGSGIVCICLTKEKCKILNLPMMV--KKNNSKYKTAFTVSIESAYGITTGVSAYDRIITIKTAIKDNAKPDDLNRPGHVFPLQAHPGGILSRAGHTEAAVDLTKLAGLKPAGVICEVMNDDGSMARMPEIINF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_CITK8 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ribB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 81/181 (44.75%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  +  A+  +R+G+               +I  A+  T E MA  ++HG+GIVC+ +  +  ++LDLP+MV  + N     T FTVT++A  G TTGVSA DR TTV    +  +KP D +RPGH+FPL+ + GGVL R GHTEA++DL  LAGF PA VLCE+ +DDG+MAR P+   F
Sbjct:   13 FERVEHALSALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAKGVTTGVSAADRVTTVRAAIADGAKPADLHRPGHVFPLRAQPGGVLTRGGHTEATIDLVTLAGFKPAGVLCELTNDDGTMARAPECIAF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA9 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 90/181 (49.72%), Postives = 117/181 (64.64%), Query Frame = 1
Query:  157 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREF 693
            SI  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + GED +RL L    A   N +K  TA+TVTVDAK+G  TG+SA DRA T+  LA   S   DF +PGH+ PL+ ++GGVL+R GHTEASVDLA LAG  PAAV+CE+V   D+G+MA+  +LR F
Sbjct:    6 SIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLAGEDCDRLGLLPQYAV--NQDKHGTAYTVTVDAKNGIGTGISASDRAATMRLLADAASTADDFTKPGHVVPLRAKDGGVLRRPGHTEASVDLAKLAGLRPAAVICEIVSQKDEGAMAQTEELRVF 184          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBB_SALHS1.897e-3945.303,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SALG21.897e-3945.303,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SALEP1.897e-3945.303,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SALDC1.897e-3945.303,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SALCH1.897e-3945.303,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_SALA41.897e-3945.303,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBB_PHOLL2.478e-3946.633,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBB_WIGBR3.236e-3944.943,4-dihydroxy-2-butanone 4-phosphate synthase OS=W... [more]
RIBB_CITK84.226e-3944.753,4-dihydroxy-2-butanone 4-phosphate synthase OS=C... [more]
RIBBA_MYCA94.226e-3949.72Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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