CX295138

Overview
NameCX295138
Unique NameCX295138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_ALCBS (Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.301e-32
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W   ++I TVQQRGAAIIKAR           A DH+R W LGT EG WVSMG+YSDGSY +  GLIYSFP TC+NG+WTIVQGL +++FSR K+  T +EL+EE+
Sbjct:  215 WYENDYIPTVQQRGAAIIKARGASSAASAANAAVDHMRSWALGTDEGDWVSMGIYSDGSYGIQEGLIYSFPCTCKNGDWTIVQGLEVNDFSRGKMQATEQELAEER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.617e-32
Identity = 66/106 (62.26%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W   +FI TVQQRGAAIIKAR           A  H+RDW LGTPE  WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGL+IDEFSR K+  T  EL EE+
Sbjct:  213 WYENDFIPTVQQRGAAIIKARGASSAASAANAAIFHMRDWALGTPENDWVSMGVYSDGSYGIEEGLIYSFPCVCKNGDWEIVQGLTIDEFSRAKMTATENELKEER 318          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.617e-32
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY +P  L+YSFPVT ++  W +V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  216 DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEK 324          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 136.732 bits (343), Expect = 9.581e-32
Identity = 67/109 (61.47%), Postives = 81/109 (74.31%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D+WL GEF+TTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  216 DSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.581e-32
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + WL GEFI+TVQ+RGAA+I ARK            DH+ DWVLGT EG +VSMGVYSDGSY VP GLI+SFPV C NG++TIVQGL +D+ S+  ++LT EEL  EK
Sbjct:  217 EKWLQGEFISTVQKRGAAVIAARKLSSAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGSYGVPEGLIFSFPVKCANGKYTIVQGLQMDDLSKNLINLTTEELVAEK 324          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.634e-31
Identity = 67/109 (61.47%), Postives = 81/109 (74.31%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D WL GEFITTVQQRGAA+IKARK           CDH+RD   GTP+G +VSMGV SDG SY +P  L+YSFP+T +N  W IV+GL I++FSR+K+DLTA+EL EEK
Sbjct:  216 DDWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPDGQFVSMGVISDGNSYGIPEDLMYSFPLTIKNKTWKIVEGLPINDFSREKMDLTAKELHEEK 324          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.755e-31
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D WLN +FI  VQ RGA +I ARK             H+RDW+LGT +G  VSM VYSDGSYNVP GLI+SFPVTC NG+WTIVQGL I+  +++K+D T +EL EEK
Sbjct:  276 DKWLNEQFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEK 383          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.211e-31
Identity = 64/107 (59.81%), Postives = 74/107 (69.16%), Query Frame = -3
Query:  316 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            AW   ++I TVQQRGAAII AR           A +HIRDW LGTP   WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGL I+EFSR K+  T +EL EE+
Sbjct:  212 AWYESDYIPTVQQRGAAIIAARGASSAASAANAAINHIRDWALGTPANDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLDINEFSRAKMTATEKELQEER 318          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 6.211e-31
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D+WL GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  216 DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_DEIGD (Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.111e-31
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W   E+I TV +RGAAII+AR           A DH+RDW LGTPEG WVSM V SDGSY +P GLIY FPV CRNG++ IVQGL I +FSR+K+D TA+EL EE+
Sbjct:  219 WYEKEYIPTVAKRGAAIIEARGASSAASAASAAIDHMRDWALGTPEGEWVSMAVPSDGSYGIPEGLIYGFPVRCRNGQYEIVQGLEISDFSRQKMDATAKELEEER 324          
The following BLAST results are available for this feature:
BLAST of CX295138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MDH_ALCBS4.301e-3259.43Malate dehydrogenase OS=Alcanivorax borkumensis (s... [more]
MDH_SACD25.617e-3262.26Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDHC_BOVIN5.617e-3260.55Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_HUMAN9.581e-3261.47Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
MDHC_DICDI9.581e-3260.19Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDHC_XENTR1.634e-3161.47Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHA_DICDI4.755e-3158.33Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]
MDH_CELJU6.211e-3159.81Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDHC_MOUSE6.211e-3162.39Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDH_DEIGD8.111e-3160.38Malate dehydrogenase OS=Deinococcus geothermalis (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05069A03SK PhIFruit1 Citrus clementina cDNA clone C05069A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295138 ID=CX295138; Name=CX295138; organism=Citrus clementina; type=EST; length=641bp
ACGAGGTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAAAAAAATTGTTAT
TGATAGTTTGATACATAAATCACAATGGGCCTTTAATATCCATTTATCCA
GGAAAAGTAACAAAACTCCAAAATCCCGATATTCAAATGCAGAAATAGCA
ACATAAGATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAA
CAATGGTTTTATTCGAAACTGTAACTATACCAACTACTCAGACAAAGCTA
AGGGCCTTGGTAACACACTATTGAAGGGAAGAAAGCATTTAAGAGAGACA
TGAGTATGCGAGGGCCTTCTCCTCGGAGAGCTCCTCTGCTGTCAAGTCCA
ACTTCTTCCTTGAGAATTCATCAATGCTGAGTCCTTGAACAATTGTCCAT
TCACCGTTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTAC
ATTGTATGAACCATCAGAGTATACCCCCATGGAGACCCAGGTGCCCTCAG
GAGTTCCAAGAACCCAATCACGGATATGGTCACAAGCAGAGCTAGCAGCA
GACAGAGCACTCGAGAGCTTTCTGGCTTTGATGATTGCAGCACCACGTTG
TTGGACTGTGGTTATGAATTCTCCATTCAACCATGCATCAT
back to top