CX295138

Overview
NameCX295138
Unique NameCX295138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_LEGPC (Malate dehydrogenase OS=Legionella pneumophila (strain Corby) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + WL   F++TVQQRGAA+IKAR               +   V  TP G   SM   S G Y V  GLI+SFP    +GE  +V+ L  ++F R++ + T  EL  E+
Sbjct:  213 ETWLKETFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLIFSFPCRREHGELKVVENLEFNDFGRERFNTTLNELRSER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_LEGPA (Malate dehydrogenase OS=Legionella pneumophila (strain Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + WL   F++TVQQRGAA+IKAR               +   V  TP G   SM   S G Y V  GLI+SFP    +GE  +V+ L  ++F R++ + T  EL  E+
Sbjct:  213 ETWLKETFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLIFSFPCRREHGELKVVENLEFNDFGRERFNTTLNELRSER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_LEGPL (Malate dehydrogenase OS=Legionella pneumophila (strain Lens) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.007e-13
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL   F++TVQQRGAA+IKAR               +   V  TP G   SM   S G Y V  GLI+SFP    +GE  +V+ +  ++F R++ ++T  EL  E+
Sbjct:  215 WLKETFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLIFSFPCRREHGELKVVENMEFNDFGRERFNITLNELRSER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_COXBU (Malate dehydrogenase OS=Coxiella burnetii GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.301e-12
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL  +FI+ +QQRGAA+IKAR           A D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  214 WLLNDFISVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_COXBR (Malate dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL  +FI  +QQRGAA+IKAR           A D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  214 WLLNDFIPVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_COXBN (Malate dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL  +FI  +QQRGAA+IKAR           A D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  214 WLLNDFIPVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_COXB1 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuK_Q154) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL  +FI  +QQRGAA+IKAR           A D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  214 WLLNDFIPVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGQYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_COXB2 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL  +FI  +QQRGAA+IKAR           A D +   +  TP     S+ + + G Y V  GLI+SFP    NG  ++++ +  +EF ++KL  T +EL EE+
Sbjct:  214 WLLNDFIPVIQQRGAAVIKARGASSAASAANAALDSVWSLINTTPADDNYSVALCAQGRYGVDEGLIFSFPCRTENGVVSVIEEIEHNEFGQQKLKETLDELREER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL GEF+  +Q R   I  + +              +  W  G+PEG   S+ V S+G YN+P G+++SFPV    G W +VQ + ++E  R  L     +L EEK
Sbjct:  353 WLEGEFLEQLQSRSHTIQDSLQHSADLSMAAAISSTLSYWWNGSPEGQLFSLAVCSEGFYNIPEGVVFSFPVMFHKGSWEVVQDIDMNEDMRVMLSSITAQLVEEK 458          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL  EF   VQ+RG A+I+               D IR  ++ TPEG W S GVY+ G+ Y +   +++S P  CR   +G++ +V+ +  D++ R+KL  T  EL  EK
Sbjct:  304 WLEEEFTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVYTTGNPYGIAEDIVFSMP--CRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEK 411          
The following BLAST results are available for this feature:
BLAST of CX295138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MDH_LEGPC1.537e-1337.96Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPA1.537e-1337.96Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPL2.007e-1337.74Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_COXBU1.301e-1236.79Malate dehydrogenase OS=Coxiella burnetii GN=mdh P... [more]
MDH_COXBR2.219e-1236.79Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXBN2.219e-1236.79Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB12.219e-1236.79Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB22.898e-1236.79Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH1B_BRAFL2.898e-1233.96Putative malate dehydrogenase 1B OS=Branchiostoma ... [more]
MDHP_MEDSA7.139e-1135.45Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]

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Properties
Property NameValue
Genbank descriptionC05069A03SK PhIFruit1 Citrus clementina cDNA clone C05069A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295138 ID=CX295138; Name=CX295138; organism=Citrus clementina; type=EST; length=641bp
ACGAGGTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAAAAAAATTGTTAT
TGATAGTTTGATACATAAATCACAATGGGCCTTTAATATCCATTTATCCA
GGAAAAGTAACAAAACTCCAAAATCCCGATATTCAAATGCAGAAATAGCA
ACATAAGATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAA
CAATGGTTTTATTCGAAACTGTAACTATACCAACTACTCAGACAAAGCTA
AGGGCCTTGGTAACACACTATTGAAGGGAAGAAAGCATTTAAGAGAGACA
TGAGTATGCGAGGGCCTTCTCCTCGGAGAGCTCCTCTGCTGTCAAGTCCA
ACTTCTTCCTTGAGAATTCATCAATGCTGAGTCCTTGAACAATTGTCCAT
TCACCGTTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTAC
ATTGTATGAACCATCAGAGTATACCCCCATGGAGACCCAGGTGCCCTCAG
GAGTTCCAAGAACCCAATCACGGATATGGTCACAAGCAGAGCTAGCAGCA
GACAGAGCACTCGAGAGCTTTCTGGCTTTGATGATTGCAGCACCACGTTG
TTGGACTGTGGTTATGAATTCTCCATTCAACCATGCATCAT
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