CX295138

Overview
NameCX295138
Unique NameCX295138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.111e-31
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D+WL GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  216 DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.059e-30
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D WL G FITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+YSFP+T +N  W IV+GL I++FSR+K+D+TA+EL +EK
Sbjct:  216 DDWLKGGFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGQFVSMGVISDGNSYGVPEDLMYSFPLTIKNKTWKIVEGLCINDFSREKMDITAKELQDEK 324          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.360e-30
Identity = 64/106 (60.38%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W   E+I TVQQRGAAIIKAR           A  H+RDW LG+PEG WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGLSIDEFS+ ++  T  EL  E+
Sbjct:  213 WYAEEYIPTVQQRGAAIIKARGASSAASAANAAIFHMRDWALGSPEGDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLSIDEFSQARMTATETELQGER 318          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.082e-30
Identity = 64/106 (60.38%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W   +FI TVQQRGAAIIKAR           A DHIRDWVLGTPEG W SM V SDGSY +  G+IYS+P  CRNG++ IVQ L IDEFSR+K+  T +EL EE+
Sbjct:  213 WYENDFIPTVQQRGAAIIKARGASSAASAASSAIDHIRDWVLGTPEGEWTSMAVPSDGSYGIEKGIIYSYPCVCRNGDYEIVQDLEIDEFSREKMQATEKELVEER 318          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.171e-29
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D+WL G+FI TVQQRGAA+IKARK           CDH+RD   GTP G +VSMGV SDG SY VP  L+YSFPV  ++  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  216 DSWLKGDFILTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIKDKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.813e-29
Identity = 63/106 (59.43%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W   E+I TV +RGAAII+AR           A DH+RDW LGT EG WVSMG+ SDGSY VP GLIY FPVT ++G++ IVQGL I EFSR K+D TA EL EE+
Sbjct:  215 WYEQEYIPTVAKRGAAIIEARGASSAASAASAAIDHMRDWALGTSEGEWVSMGIPSDGSYGVPEGLIYGFPVTVKDGKYQIVQGLEISEFSRGKMDATARELEEER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.592e-29
Identity = 61/106 (57.55%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W+  +FI TV +RGAAII AR             D  RDW+LGTP G WVSM V SDGSY VP GLI SFPVT ++G+WTIVQGL IDEFSR ++D T  EL++E+
Sbjct:  215 WIENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.592e-29
Identity = 61/106 (57.55%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W+  +FI TV +RGAAII AR             D  RDW+LGTP G WVSM V SDGSY VP GLI SFPVT ++G+WTIVQGL IDEFSR ++D T  EL++E+
Sbjct:  215 WIENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.691e-28
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = -3
Query:  313 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 633
            W+  EFI TV  RGAAII+AR             D  RDW+LGTPEG WVSM V SDGSY VP GL+YS+PVT   G W IV+GL +++FSR+K+D TA EL +E+A
Sbjct:  214 WIENEFIPTVAGRGAAIIEARGASSAASAASATIDAARDWLLGTPEGDWVSMAVASDGSYGVPEGLMYSYPVTTSGGNWEIVEGLEVNDFSRRKMDATAAELFDERA 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.921e-28
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            DAW    FI TV +RGAAII+AR           A DHIRDW LGT  G WV+MG+ SDGSY++P G++Y FPVTC+NGE+ IV+GL ID FSR+K++ T +EL+EEK
Sbjct:  222 DAWNKDTFIPTVGKRGAAIIEARGLSSAASAASAAVDHIRDWWLGT-NGEWVTMGIPSDGSYDIPEGIMYGFPVTCKNGEYEIVKGLEIDAFSREKMNNTLKELNEEK 328          
The following BLAST results are available for this feature:
BLAST of CX295138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MDHC_RAT8.111e-3162.39Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_XENLA1.059e-3060.55Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDH_TERTT2.360e-3060.38Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_ALHEH3.082e-3060.38Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDHC_CHICK1.171e-2958.72Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDH_DEIDV5.813e-2959.43Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_MYCPA7.592e-2957.55Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_MYCA17.592e-2957.55Malate dehydrogenase OS=Mycobacterium avium (strai... [more]
MDH_ARTAT1.691e-2856.07Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]
MDH_BDEBA4.921e-2857.41Malate dehydrogenase OS=Bdellovibrio bacteriovorus... [more]

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Properties
Property NameValue
Genbank descriptionC05069A03SK PhIFruit1 Citrus clementina cDNA clone C05069A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295138 ID=CX295138; Name=CX295138; organism=Citrus clementina; type=EST; length=641bp
ACGAGGTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAAAAAAATTGTTAT
TGATAGTTTGATACATAAATCACAATGGGCCTTTAATATCCATTTATCCA
GGAAAAGTAACAAAACTCCAAAATCCCGATATTCAAATGCAGAAATAGCA
ACATAAGATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAA
CAATGGTTTTATTCGAAACTGTAACTATACCAACTACTCAGACAAAGCTA
AGGGCCTTGGTAACACACTATTGAAGGGAAGAAAGCATTTAAGAGAGACA
TGAGTATGCGAGGGCCTTCTCCTCGGAGAGCTCCTCTGCTGTCAAGTCCA
ACTTCTTCCTTGAGAATTCATCAATGCTGAGTCCTTGAACAATTGTCCAT
TCACCGTTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTAC
ATTGTATGAACCATCAGAGTATACCCCCATGGAGACCCAGGTGCCCTCAG
GAGTTCCAAGAACCCAATCACGGATATGGTCACAAGCAGAGCTAGCAGCA
GACAGAGCACTCGAGAGCTTTCTGGCTTTGATGATTGCAGCACCACGTTG
TTGGACTGTGGTTATGAATTCTCCATTCAACCATGCATCAT
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