CX295138

Overview
NameCX295138
Unique NameCX295138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.096e-27
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = -3
Query:  316 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            AW+   FI TV +RGAAII AR             D  RDW+LGTPEG WVSM V SDGSY VP GLI SFPVT  +G+WTIV+GL ID+FSR ++D +  EL++E+
Sbjct:  214 AWIEDYFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPEGNWVSMAVVSDGSYGVPEGLISSFPVTTTDGDWTIVRGLGIDDFSRGRIDKSTAELADER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.432e-27
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + WL  +FI TVQQRG AII+AR           A DHI DWVLGTP G W SM V SDGSY VP GLI SFPVTC +G + IV+GL +D FSR+++D +  EL+ E+
Sbjct:  216 EQWLREDFIPTVQQRGTAIIQARGASSAASAASAAIDHIHDWVLGTPAGEWTSMAVPSDGSYGVPDGLISSFPVTCADGAYRIVEGLEVDAFSRERIDASVAELTAER 323          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_PSYCK (Malate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.870e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  316 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSI-DEFSRKKLDLTAEELSEEK 636
            AW  G +I  VQQRGAAIIKAR           A  H+R WV+GT E  WVSMGVYS+G Y +  GLIYSFPVTC NG+W+IV G+ +  +FS++K+  T +ELSEE+
Sbjct:  214 AWYEGTYIPEVQQRGAAIIKARGASSAASAANAAIAHVRTWVMGTDENDWVSMGVYSNGEYGIAKGLIYSFPVTCANGDWSIVDGVDVSSDFSKEKMAATEQELSEER 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.442e-27
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + WL   FI TV +RGAAII+AR           A DH+ DWV GTPEG W S+ + SDGSY VP GL+ SFPV  RNG W IVQGL I+EFSR+++D +  EL EE+
Sbjct:  213 EEWLRDTFIPTVAKRGAAIIEARGASSAASAANAAIDHVYDWVNGTPEGDWTSVALPSDGSYGVPEGLVSSFPVVSRNGSWEIVQGLEINEFSRERIDASVRELEEER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.190e-27
Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  313 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 636
            AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  214 AWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCTA (Malate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.190e-27
Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  313 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 636
            AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  214 AWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCBT (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.190e-27
Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  313 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 636
            AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  214 AWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCBP (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.190e-27
Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  313 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 636
            AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  214 AWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.190e-27
Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  313 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 636
            AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  214 AWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.441e-27
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  319 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 633
            W    FI TV QRGAAII+AR           A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  213 WYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
The following BLAST results are available for this feature:
BLAST of CX295138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MDH_MYCLE1.096e-2756.07Malate dehydrogenase OS=Mycobacterium leprae GN=md... [more]
MDH_NOCFA1.432e-2755.56Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]
MDH_PSYCK1.870e-2754.63Malate dehydrogenase OS=Psychrobacter cryohalolent... [more]
MDH_THEFY2.442e-2754.63Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDH_MYCTU3.190e-2755.56Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCTA3.190e-2755.56Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCBT3.190e-2755.56Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBP3.190e-2755.56Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBO3.190e-2755.56Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]
MDH_THETH5.441e-2753.33Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]

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Properties
Property NameValue
Genbank descriptionC05069A03SK PhIFruit1 Citrus clementina cDNA clone C05069A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295138 ID=CX295138; Name=CX295138; organism=Citrus clementina; type=EST; length=641bp
ACGAGGTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAAAAAAATTGTTAT
TGATAGTTTGATACATAAATCACAATGGGCCTTTAATATCCATTTATCCA
GGAAAAGTAACAAAACTCCAAAATCCCGATATTCAAATGCAGAAATAGCA
ACATAAGATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAA
CAATGGTTTTATTCGAAACTGTAACTATACCAACTACTCAGACAAAGCTA
AGGGCCTTGGTAACACACTATTGAAGGGAAGAAAGCATTTAAGAGAGACA
TGAGTATGCGAGGGCCTTCTCCTCGGAGAGCTCCTCTGCTGTCAAGTCCA
ACTTCTTCCTTGAGAATTCATCAATGCTGAGTCCTTGAACAATTGTCCAT
TCACCGTTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTAC
ATTGTATGAACCATCAGAGTATACCCCCATGGAGACCCAGGTGCCCTCAG
GAGTTCCAAGAACCCAATCACGGATATGGTCACAAGCAGAGCTAGCAGCA
GACAGAGCACTCGAGAGCTTTCTGGCTTTGATGATTGCAGCACCACGTTG
TTGGACTGTGGTTATGAATTCTCCATTCAACCATGCATCAT
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