CX295138

Overview
NameCX295138
Unique NameCX295138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.441e-27
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  319 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 633
            W    FI TV QRGAAII+AR           A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  213 WYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.441e-27
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  319 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 633
            W    FI TV QRGAAII+AR           A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  213 WYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.441e-27
Identity = 62/107 (57.94%), Postives = 71/107 (66.36%), Query Frame = -3
Query:  316 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            AWL   FI TV +RGAAII+AR           A DHI  WV GTPEG W S  V SDGSY VP GLI SFPV  R+G + IVQGL IDEFSR+++D +  ELSEE+
Sbjct:  213 AWLADTFIPTVAKRGAAIIEARGASSAASAANAAIDHIHTWVNGTPEGDWTSAAVVSDGSYGVPEGLISSFPVVARDGRYEIVQGLEIDEFSRQRIDASVNELSEER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.106e-27
Identity = 56/106 (52.83%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W   ++I TV +RGAAII+AR           A DH+ DW LGT +G WVSMG+ SDGSY +P GLIY FPV  ++G++ IVQGL + +FSR K+D TA+EL EE+
Sbjct:  215 WYENDYIPTVAKRGAAIIEARGASSAASAASAAIDHMHDWALGTKDGEWVSMGIPSDGSYGIPEGLIYGFPVRVKDGKYEIVQGLDVSDFSRGKMDATAQELEEER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.067e-26
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = -3
Query:  313 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 639
            D W    F+ TV +RGAAII+AR           A DHIRDWVLGT  G WV+MGV SDGSY +P G++Y  PV C NGE+  V+GL ID FSR+++DLT  EL EE+A
Sbjct:  212 DVWNRDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGVPSDGSYGIPEGVMYGVPVVCENGEYKRVEGLEIDAFSRERMDLTLAELEEERA 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.700e-26
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + WL  EFI TV +RGAAII+AR           A DH+  WV GT EG W SMG+ SDGSY VP G+I SFPVT ++G + IVQGL I+EFSR ++D + +ELSEE+
Sbjct:  213 EKWLADEFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGSYEIVQGLDINEFSRARIDASVKELSEER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_PROAC (Malate dehydrogenase OS=Propionibacterium acnes GN=mdh PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.700e-26
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            +AW+  EFI TV +RGAAII AR             + +RDW+  TPEG WVSM + SDGSY VP GLI SFPVT  NG+  IVQGL ID+FSR K+D +A+EL++E+
Sbjct:  211 EAWIENEFIPTVAKRGAAIIDARGASSAASAANATVECMRDWMGSTPEGDWVSMAIPSDGSYGVPEGLISSFPVTITNGKVEIVQGLDIDDFSRAKIDASAKELADER 318          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.700e-26
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = -3
Query:  316 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            AW    F+ TV +RGAAII+AR           A DHIRDWVLG+  G WV+MG+ SDGSY +P G+IY FPVT  NGE+ IVQGL IDEFSR+++ +T  EL EE+
Sbjct:  217 AWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGS-NGEWVTMGIPSDGSYGIPEGVIYGFPVTTENGEYKIVQGLEIDEFSRERMTVTLNELLEER 322          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.527e-26
Identity = 58/107 (54.21%), Postives = 71/107 (66.36%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDE-FSRKKLDLTAEELSEEK 633
            W  G +I  VQQRGAAIIKAR           A  H+R WVLGT E  WVSMGVYS+G Y +  GLIYSFP TC NG+W+IV G+ +   FS++K+  T +ELSEE+
Sbjct:  215 WYEGTYIPEVQQRGAAIIKARGASSAASAANAAIAHMRTWVLGTDENDWVSMGVYSNGEYGIAKGLIYSFPCTCTNGDWSIVDGVDVSSAFSKEKMAATEQELSEER 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_ACIBY (Malate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.606e-26
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  313 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 636
            AW    F+ TV +RGAAII+AR           A DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  215 AWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
The following BLAST results are available for this feature:
BLAST of CX295138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MDH_THET85.441e-2753.33Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET25.441e-2753.33Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_SACEN5.441e-2757.94Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_DEIRA7.106e-2752.83Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_CHRVO2.067e-2655.05Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH_STRCO2.700e-2654.63Malate dehydrogenase OS=Streptomyces coelicolor GN... [more]
MDH_PROAC2.700e-2654.63Malate dehydrogenase OS=Propionibacterium acnes GN... [more]
MDH_AZOSB2.700e-2656.07Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH_PSYA23.527e-2654.21Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_ACIBY4.606e-2654.63Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05069A03SK PhIFruit1 Citrus clementina cDNA clone C05069A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295138 ID=CX295138; Name=CX295138; organism=Citrus clementina; type=EST; length=641bp
ACGAGGTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAAAAAAATTGTTAT
TGATAGTTTGATACATAAATCACAATGGGCCTTTAATATCCATTTATCCA
GGAAAAGTAACAAAACTCCAAAATCCCGATATTCAAATGCAGAAATAGCA
ACATAAGATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAA
CAATGGTTTTATTCGAAACTGTAACTATACCAACTACTCAGACAAAGCTA
AGGGCCTTGGTAACACACTATTGAAGGGAAGAAAGCATTTAAGAGAGACA
TGAGTATGCGAGGGCCTTCTCCTCGGAGAGCTCCTCTGCTGTCAAGTCCA
ACTTCTTCCTTGAGAATTCATCAATGCTGAGTCCTTGAACAATTGTCCAT
TCACCGTTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTAC
ATTGTATGAACCATCAGAGTATACCCCCATGGAGACCCAGGTGCCCTCAG
GAGTTCCAAGAACCCAATCACGGATATGGTCACAAGCAGAGCTAGCAGCA
GACAGAGCACTCGAGAGCTTTCTGGCTTTGATGATTGCAGCACCACGTTG
TTGGACTGTGGTTATGAATTCTCCATTCAACCATGCATCAT
back to top