CX295138

Overview
NameCX295138
Unique NameCX295138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.856e-26
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            +AW    FI TV +RGAAII+AR           A DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPVT  NGE+T+V+ L +D FSR+++D T +EL EE+
Sbjct:  215 EAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVTTANGEYTMVKDLEVDAFSRERMDFTLKELLEER 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + WL   FI TV +RGAAII+AR           A DH+  WV GT EG W SMG+ SDGSY VP G+I SFPVT ++G++ IVQGL I+EFSR ++D + +EL+EE+
Sbjct:  213 EVWLADTFIPTVAKRGAAIIEARGASSAASAANAAIDHVHTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGKYEIVQGLDINEFSRTRIDASVKELTEER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25
Identity = 58/107 (54.21%), Postives = 71/107 (66.36%), Query Frame = -3
Query:  316 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            AW+   FI TV +RGA II AR           + D  R W+LGTP   WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D TA EL++E+
Sbjct:  214 AWIEEYFIPTVAKRGATIIDARGASSAASAASASVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTAAELADER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = -3
Query:  316 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            AW+   FI TV +RGAAII AR             D  R W+LGTP   WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D T  EL++E+
Sbjct:  214 AWIEEYFIPTVAKRGAAIIDARGASSAASAASATVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTTAELADER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            DAW    FI TV +RGAAII+AR           A DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY  PVT  NGE+  V+GL ID FSR++LD T +EL EE+
Sbjct:  215 DAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGVPVTTENGEYKRVEGLEIDAFSRERLDFTLKELLEER 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.340e-25
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLNELLEER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = -3
Query:  319 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 633
            W+   FI TVQ RGA +I+AR             DH+RDW+ GT +  W++MG+ SDGSY +P G+IY FPV C+NG   IVQGL I  FSR +LD+  +EL++E
Sbjct:  214 WVENSFIPTVQNRGAVVIEARGLSSAASAANAIIDHMRDWIFGTRDDDWITMGILSDGSYKIPKGVIYGFPVVCKNGGRKIVQGLEISPFSRTRLDIAYDELTQE 318          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURCJ (Malate dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURCH (Malate dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
The following BLAST results are available for this feature:
BLAST of CX295138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MDH_BORA17.856e-2652.78Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_STRGG1.026e-2552.78Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_MYCUA1.026e-2554.21Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM1.026e-2554.21Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_BORPD1.026e-2554.63Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_BURPP1.340e-2554.63Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_NITEU1.750e-2548.57Malate dehydrogenase OS=Nitrosomonas europaea GN=m... [more]
MDH_BURCJ1.750e-2554.63Malate dehydrogenase OS=Burkholderia cepacia (stra... [more]
MDH_BURCH1.750e-2554.63Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCC1.750e-2554.63Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]

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Properties
Property NameValue
Genbank descriptionC05069A03SK PhIFruit1 Citrus clementina cDNA clone C05069A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295138 ID=CX295138; Name=CX295138; organism=Citrus clementina; type=EST; length=641bp
ACGAGGTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAAAAAAATTGTTAT
TGATAGTTTGATACATAAATCACAATGGGCCTTTAATATCCATTTATCCA
GGAAAAGTAACAAAACTCCAAAATCCCGATATTCAAATGCAGAAATAGCA
ACATAAGATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAA
CAATGGTTTTATTCGAAACTGTAACTATACCAACTACTCAGACAAAGCTA
AGGGCCTTGGTAACACACTATTGAAGGGAAGAAAGCATTTAAGAGAGACA
TGAGTATGCGAGGGCCTTCTCCTCGGAGAGCTCCTCTGCTGTCAAGTCCA
ACTTCTTCCTTGAGAATTCATCAATGCTGAGTCCTTGAACAATTGTCCAT
TCACCGTTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTAC
ATTGTATGAACCATCAGAGTATACCCCCATGGAGACCCAGGTGCCCTCAG
GAGTTCCAAGAACCCAATCACGGATATGGTCACAAGCAGAGCTAGCAGCA
GACAGAGCACTCGAGAGCTTTCTGGCTTTGATGATTGCAGCACCACGTTG
TTGGACTGTGGTTATGAATTCTCCATTCAACCATGCATCAT
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