CX295138

Overview
NameCX295138
Unique NameCX295138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.286e-25
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            W+   FI TV +RGAAII+AR             D  RDW+ G+ +  WVSM V SDGSY VP GLI SFPVT ++G+W IVQGL ID+FSR K+D +  EL++E+
Sbjct:  214 WIESTFIPTVAKRGAAIIEARGSSSAASAASATIDAARDWLFGSADADWVSMAVVSDGSYGVPEGLISSFPVTTKDGDWEIVQGLEIDDFSRAKIDASTAELADER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.286e-25
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T +EL EE+
Sbjct:  213 EEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLQELLEER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.286e-25
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            DAW    FI TV +RGAAII+AR           A DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  215 DAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.286e-25
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            DAW    FI TV +RGAAII+AR           A DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  215 DAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.286e-25
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            DAW    FI TV +RGAAII+AR           A DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  215 DAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH2_BURVG (Malate dehydrogenase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.286e-25
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRETFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            + WL  +FI TV +RGAAII+AR           A DH+  WV GT +G W SMG+ SDGSY VP GLI SFPVT ++G + IVQGL I+EFSR ++D + +EL EE+
Sbjct:  213 EKWLAEDFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTADGDWTSMGIPSDGSYGVPEGLISSFPVTTKDGRYEIVQGLEINEFSRARIDASVKELEEER 320          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = -3
Query:  316 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            WL G+FI TV  RG+AII+AR           A DH+ DWVLGTPEG W S+ + S G+Y VP GL+ SFPV   +G W +V+GL ID+FSRK++D +  +L  E+
Sbjct:  217 WLTGDFIPTVANRGSAIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLVSSFPVRSVDGAWQVVEGLEIDDFSRKRIDASVADLESER 322          
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            DAW    F+ TV +RGAAII AR           A DHI DWVLGT  G W +MG+ SDGSY +P G+I+ FPVT  NGE+ IVQGLSID FS++++++T  EL EE+
Sbjct:  215 DAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 321          
The following BLAST results are available for this feature:
BLAST of CX295138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MDH_BURCA1.750e-2554.63Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_NOCSJ2.286e-2551.89Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_BURXL2.286e-2553.70Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_BORPE2.286e-2552.78Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA2.286e-2552.78Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR2.286e-2552.78Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDH2_BURVG2.286e-2554.63Malate dehydrogenase 2 OS=Burkholderia vietnamiens... [more]
MDH_STRAW2.985e-2552.78Malate dehydrogenase OS=Streptomyces avermitilis G... [more]
MDH_RHOOB2.985e-2550.00Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_AQUAR3.899e-2553.70Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05069A03SK PhIFruit1 Citrus clementina cDNA clone C05069A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295138 ID=CX295138; Name=CX295138; organism=Citrus clementina; type=EST; length=641bp
ACGAGGTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAAAAAAATTGTTAT
TGATAGTTTGATACATAAATCACAATGGGCCTTTAATATCCATTTATCCA
GGAAAAGTAACAAAACTCCAAAATCCCGATATTCAAATGCAGAAATAGCA
ACATAAGATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAA
CAATGGTTTTATTCGAAACTGTAACTATACCAACTACTCAGACAAAGCTA
AGGGCCTTGGTAACACACTATTGAAGGGAAGAAAGCATTTAAGAGAGACA
TGAGTATGCGAGGGCCTTCTCCTCGGAGAGCTCCTCTGCTGTCAAGTCCA
ACTTCTTCCTTGAGAATTCATCAATGCTGAGTCCTTGAACAATTGTCCAT
TCACCGTTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTAC
ATTGTATGAACCATCAGAGTATACCCCCATGGAGACCCAGGTGCCCTCAG
GAGTTCCAAGAACCCAATCACGGATATGGTCACAAGCAGAGCTAGCAGCA
GACAGAGCACTCGAGAGCTTTCTGGCTTTGATGATTGCAGCACCACGTTG
TTGGACTGTGGTTATGAATTCTCCATTCAACCATGCATCAT
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