CX295138

Overview
NameCX295138
Unique NameCX295138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = -3 
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = -3 
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = -3 
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = -3 
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURM9 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = -3 
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_BURM7 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = -3 
Query:  316 DAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 639
            D W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  213 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = -3 
Query:  313 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 633
            W    FI TV +RGAAII+AR           A DHIRDWVLGT  G WV+MGV SDGSY +P G+++ FPVT  NG++TIV+ L ID+FS+K +D T  EL EE++
Sbjct:  216 WNASTFIPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGKYTIVKDLPIDDFSQKYIDKTLAELEEERS 321
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = -3 
Query:  313 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 633
            W    FI TV +RGAAII+AR           A DHIRDWVLGT  G WV+MGV SDGSY +P G+++ FPVT  NG++TIV+ L ID+FS+K +D T  EL EE++
Sbjct:  216 WNASTFIPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-SGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGKYTIVKDLPIDDFSQKYIDKTLAELEEERS 321
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = -3 
Query:  313 AWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 636
            AW    FI TV +RGAAII+AR           A DHI DWVLGT  G WV+MG+ S G Y++PA +IY FPV C NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  216 AWNKDVFIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYDIPAEVIYGFPVVCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322
[Close]
BLAST of CX295138 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = -3 
Query:  319 WLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 633
            W+   FI TVQ+RGA +I+AR             DH+R+W  GT +G W +MG+ SDGSY +P G+IY FPV C+NG   IVQGL I+ FSR +LD    EL++E
Sbjct:  214 WIENYFIPTVQKRGAVVIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQE 318
The following BLAST results are available for this feature:
BLAST of CX295138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MDH_BURP18.686e-2553.70Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP08.686e-2553.70Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS8.686e-2553.70Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA8.686e-2553.70Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]
MDH_BURM98.686e-2553.70Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM78.686e-2553.70Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_XANC51.482e-2454.21Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANAC1.482e-2454.21Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]
MDH_POLNS1.482e-2452.78Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_NITEC1.482e-2448.57Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05069A03SK PhIFruit1 Citrus clementina cDNA clone C05069A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295138 ID=CX295138; Name=CX295138; organism=Citrus clementina; type=EST; length=641bp
ACGAGGTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAAAAAAATTGTTAT
TGATAGTTTGATACATAAATCACAATGGGCCTTTAATATCCATTTATCCA
GGAAAAGTAACAAAACTCCAAAATCCCGATATTCAAATGCAGAAATAGCA
ACATAAGATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAA
CAATGGTTTTATTCGAAACTGTAACTATACCAACTACTCAGACAAAGCTA
AGGGCCTTGGTAACACACTATTGAAGGGAAGAAAGCATTTAAGAGAGACA
TGAGTATGCGAGGGCCTTCTCCTCGGAGAGCTCCTCTGCTGTCAAGTCCA
ACTTCTTCCTTGAGAATTCATCAATGCTGAGTCCTTGAACAATTGTCCAT
TCACCGTTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTAC
ATTGTATGAACCATCAGAGTATACCCCCATGGAGACCCAGGTGCCCTCAG
GAGTTCCAAGAACCCAATCACGGATATGGTCACAAGCAGAGCTAGCAGCA
GACAGAGCACTCGAGAGCTTTCTGGCTTTGATGATTGCAGCACCACGTTG
TTGGACTGTGGTTATGAATTCTCCATTCAACCATGCATCAT
back to top