CX295139

Overview
NameCX295139
Unique NameCX295139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10441 contig Ccv1_Contig10441:1397..2073. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.039e-95
Identity = 173/225 (76.89%), Postives = 193/225 (85.78%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGS 677
            KLMFAQFS+LVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL NPVTNHVQSAEQHNQDVNSLGLISSRKTAEA+DILKLMSSTFL+ALCQA+DLRH+EEN+K  VK+ V  VAKK L+  ++G+LH +RFCEKDLLK  DRE VFAY DDPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+
Sbjct:  418 KLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGT 642          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.155e-95
Identity = 172/225 (76.44%), Postives = 192/225 (85.33%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGS 677
            KLMFAQFS+LVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL NPVTNHVQSAEQHNQDVNSLGLISSRKT EA+DILKLMSSTFL+ALCQA+DLRH+EEN+K  VK+ V  VAKK L+  ++G+LH +RFCEKDLLK  DRE VFAY DDPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+
Sbjct:  418 KLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTDEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGT 642          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 2.647e-91
Identity = 166/225 (73.78%), Postives = 194/225 (86.22%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGS 677
            KLMFAQFS+LVN+FYNNGL SNL+G RNPSLDYGFKG EIAMASYCSELQ+LANP+TNHVQSAEQHNQDVNSLGL+S+RKT EAVDILKLM+ST++VALCQA+DLRHLEEN+K +VKN V+QVAKKVLT+  +G+L  +RF EK+LL A DRE VF+Y DDPCSA YPLMQKLR VLVEHAL +G+ E  A  S+F KI  FEEEL++ LP+E+E AR  V NG+
Sbjct:  408 KLMFAQFSELVNEFYNNGLTSNLAGSRNPSLDYGFKGTEIAMASYCSELQYLANPITNHVQSAEQHNQDVNSLGLVSARKTLEAVDILKLMTSTYIVALCQAVDLRHLEENIKSSVKNCVTQVAKKVLTMNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSANYPLMQKLRAVLVEHALTSGDAEPEA--SVFSKITKFEEELRSALPREIEAARVAVANGT 630          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.453e-89
Identity = 162/225 (72.00%), Postives = 186/225 (82.67%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGS 677
            KLMFAQFS+LVND+YN GLPSNLSGG NPSLDYG KGAEIAMASY SEL +LANPVT+HVQSAEQHNQDVNSLGL+S+RK+AEA+DILKLM ST+L ALCQA+DLRHLEEN+  TVK  VSQVAKK L+ G +GEL P RFCEKDLL+  D EHVF+YIDDPC+A+YPL QKLR +LVEHA  N E EK  N+SIF KI  FE ELK  L  +V  AR++ + G+
Sbjct:  424 KLMFAQFSELVNDYYNGGLPSNLSGGPNPSLDYGLKGAEIAMASYTSELLYLANPVTSHVQSAEQHNQDVNSLGLVSARKSAEAIDILKLMLSTYLTALCQAVDLRHLEENMLATVKQIVSQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNAEGEKDPNTSIFNKIPVFEAELKAQLEPQVSLARESYDKGT 648          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.134e-84
Identity = 155/225 (68.89%), Postives = 186/225 (82.67%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGS 677
            KL+FAQF++L ND YNNGLPSNLS GRNPSLDYGFK +E+AMA+YCSELQ+LANPVT+HVQS EQHNQDVNSLGLIS+ KT EA++ILKLMSST+LVALCQAIDLRHLEE  K+TVKNTVS+VA K LT     E +P RF E++LLK  DRE+VF+YIDDP +  YPLM KL+QVL E A  +  N+K  +  +F+KI AFE+ELK++LPKEVE+AR   ENG+
Sbjct:  416 KLIFAQFTELANDLYNNGLPSNLSVGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSTEQHNQDVNSLGLISALKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLTTEDKEETNPFRFSEEELLKVVDREYVFSYIDDPLNVRYPLMPKLKQVLYEQAHTSVINDKNVSLLVFEKIGAFEDELKSLLPKEVESARVAYENGN 640          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.179e-79
Identity = 142/163 (87.12%), Postives = 154/163 (94.48%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPC 491
            KLMFAQFS+LVND+YNNGLPSNL+ GRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKTAEAVDILKLMSST+LVALCQAIDLRHLEENLK  VKNTVSQVAK+ LT+G  GELHP+RFCEK+LL+  DRE++FAY DDPC
Sbjct:  428 KLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSVVKNTVSQVAKRTLTIGVLGELHPARFCEKELLRVVDREYLFAYADDPC 590          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 4.847e-77
Identity = 154/225 (68.44%), Postives = 172/225 (76.44%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGS 677
            KLMFAQF++LVNDFYNNGLPSNLSGGRNPSLDYG KGAE+AMASYCSELQFLANPVTNHV+SA QHNQDVNSLGLISSR TAEAV ILKLMS+T+LVALCQA DLRHLEE LK  V   VS  AK VL +       P R    D+L   +RE+VF+Y+DDP S T PLMQKLR VL + AL   E E     ++F+KI AFE ELK +LPKEVE  R   ENG+
Sbjct:  409 KLMFAQFTELVNDFYNNGLPSNLSGGRNPSLDYGLKGAEVAMASYCSELQFLANPVTNHVESASQHNQDVNSLGLISSRTTAEAVVILKLMSTTYLVALCQAFDLRHLEEILKKAVNEVVSHTAKSVLAI------EPFR-KHDDILGVVNREYVFSYVDDPSSLTNPLMQKLRHVLFDKALAEPEGE---TDTVFRKIGAFEAELKFLLPKEVERVRTEYENGT 623          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PALY_MALDO (Phenylalanine ammonia-lyase (Fragment) OS=Malus domestica GN=PAL PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.906e-73
Identity = 135/162 (83.33%), Postives = 150/162 (92.59%), Query Frame = 3
Query:  192 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGS 677
            EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ+IDLRHLEENL++TVKNTVSQVAK+ LT G +GELHPSRFCEKDLLK  DRE+VFAYIDDPCSATYPLMQKLR+VL+EHAL NGE+EK A++SIFQKI AFEEELK +LPKEVE+AR  +E G+
Sbjct:    3 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQSIDLRHLEENLRNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLREVLIEHALTNGESEKNASTSIFQKIGAFEEELKALLPKEVESARSAIEGGN 164          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PALY_AGABI (Phenylalanine ammonia-lyase (Fragment) OS=Agaricus bisporus GN=palA PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.297e-25
Identity = 54/109 (49.54%), Postives = 82/109 (75.23%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 329
            K++FAQ ++L+N   N GLP +L+   +PSL+Y  KG +IA A+Y +EL +LA+PV+ H+QSAE HNQ VNS+ L+S+R T  ++D+L ++ +T+L  LCQA+DLR L+
Sbjct:   32 KIIFAQSTELINPATNRGLPPSLAAS-DPSLNYHVKGVDIATAAYAAELGYLASPVSTHIQSAEMHNQAVNSMALVSARATINSIDVLSMLVATYLYNLCQALDLRALQ 139          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PALY_USTMA (Phenylalanine ammonia-lyase OS=Ustilago maydis GN=PAL1 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 54/109 (49.54%), Postives = 76/109 (69.72%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 329
            K+ F Q ++LVN   N GLP+NL+   + SL++  KG +IA+AS  SEL FL NPV+ HVQSAE  NQ +NSL LIS R+T +A++ L ++ +  L  LCQA+D+R L+
Sbjct:  432 KMTFQQMTELVNPAMNRGLPANLASTPDLSLNFHAKGIDIALASVTSELMFLGNPVSTHVQSAEMANQAINSLALISGRQTLQAIECLSMIQAWSLYLLCQALDIRALQ 540          
The following BLAST results are available for this feature:
BLAST of CX295139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PAL2_ORYSI1.039e-9576.89Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSJ5.155e-9576.44Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL1_ORYSJ2.647e-9173.78Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA1.453e-8972.00Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PAL3_PHAVU3.134e-8468.89Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL2_SOLTU5.179e-7987.12Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]
PAL3_ARATH4.847e-7768.44Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PALY_MALDO1.906e-7383.33Phenylalanine ammonia-lyase (Fragment) OS=Malus do... [more]
PALY_AGABI3.297e-2549.54Phenylalanine ammonia-lyase (Fragment) OS=Agaricus... [more]
PALY_USTMA5.263e-2349.54Phenylalanine ammonia-lyase OS=Ustilago maydis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05069A04SK PhIFruit1 Citrus clementina cDNA clone C05069A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295139 ID=CX295139; Name=CX295139; organism=Citrus clementina; type=EST; length=677bp
GGAAGCTCATGTTTGCCCAATTTTCTGACCTTGTCAACGATTTTTACAAC
AATGGATTGCCGTCAAATCTGTCTGGTGGCAGGAATCCTAGCCTGGATTA
TGGTTTCAAGGGCGCTGAAATTGCTATGGCTTCCTATTGTTCGGAGCTCC
AATTTCTTGCCAATCCTGTTACTAACCACGTCCAAAGTGCTGAACAGCAC
AACCAAGATGTAAACTCCTTGGGATTGATCTCTTCCAGGAAGACTGCTGA
AGCAGTCGACATCCTGAAGCTCATGTCTTCCACATTCTTGGTAGCGCTTT
GCCAGGCTATTGATTTGAGACATTTGGAGGAAAATTTGAAGCATACAGTC
AAGAATACTGTCAGCCAAGTAGCTAAGAAAGTCTTAACCGTCGGTGCTAG
TGGAGAGCTTCATCCATCAAGATTCTGTGAGAAGGATCTGCTCAAAGCGG
CTGATCGCGAACACGTCTTTGCATACATTGATGACCCCTGCAGTGCTACC
TATCCATTGATGCAAAAGCTAAGGCAAGTACTTGTTGAGCACGCACTGAA
CAATGGAGAGAACGAGAAGACTGCCAACTCTTCAATCTTCCAGAAGATTG
CAGCCTTTGAGGAGGAATTGAAAACCGTTTTGCCGAAAGAAGTTGAGAAT
GCCAGGCAGACTGTTGAGAATGGAAGT
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