CX295139

Overview
NameCX295139
Unique NameCX295139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10441 contig Ccv1_Contig10441:1397..2073. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLK 341
            KL F Q ++++N   N GLPS L+   +PSL Y  KG +IA A+Y SEL  LANPVT HVQ AE  NQ VNSL LIS+R+T E+ D+L L+ +T L  + QAIDLR +E   K
Sbjct:  434 KLNFTQLTEMLNAGMNRGLPSCLAA-EDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAEMANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFK 545          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGEL 410
            K+ F Q ++++N   N  LPS L+   +PSL Y  KG +IA A+Y SEL  LANPV+ HVQ AE  NQ +NSL LIS+R+TAEA D+L L+ +T L  + QA+DLR +E       +  V+++ K+     A+ E+
Sbjct:  436 KVSFTQLTEMLNAGMNRALPSCLAA-EDPSLSYHCKGLDIAAAAYTSELGHLANPVSTHVQPAEMGNQAINSLALISARRTAEANDVLSLLLATHLYCVLQAVDLRAMEFEHTKAFEPMVTELLKQHFGALATAEV 570          
BLAST of CX295139 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 3
Query:    3 KLMFAQFSDLVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 329
            KL+F+Q ++LVN   N GLP +++   +PSL+Y  KG +IA A+Y +E    A P   H+QSAE HNQ VNSL LIS+R T  ++++L  + +++L  LCQA+DLR L+
Sbjct:  450 KLLFSQSTELVNPAMNRGLPPSVAA-TDPSLNYHAKGLDIATAAYVAE----ATPGPTHIQSAEMHNQAVNSLALISARATITSLEVLTSLIASYLYILCQALDLRALQ 553          
The following BLAST results are available for this feature:
BLAST of CX295139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PALY_RHOTO5.263e-2353.10Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_RHORB2.000e-2244.12Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_AMAMU2.703e-1946.79Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]

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Properties
Property NameValue
Genbank descriptionC05069A04SK PhIFruit1 Citrus clementina cDNA clone C05069A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295139 ID=CX295139; Name=CX295139; organism=Citrus clementina; type=EST; length=677bp
GGAAGCTCATGTTTGCCCAATTTTCTGACCTTGTCAACGATTTTTACAAC
AATGGATTGCCGTCAAATCTGTCTGGTGGCAGGAATCCTAGCCTGGATTA
TGGTTTCAAGGGCGCTGAAATTGCTATGGCTTCCTATTGTTCGGAGCTCC
AATTTCTTGCCAATCCTGTTACTAACCACGTCCAAAGTGCTGAACAGCAC
AACCAAGATGTAAACTCCTTGGGATTGATCTCTTCCAGGAAGACTGCTGA
AGCAGTCGACATCCTGAAGCTCATGTCTTCCACATTCTTGGTAGCGCTTT
GCCAGGCTATTGATTTGAGACATTTGGAGGAAAATTTGAAGCATACAGTC
AAGAATACTGTCAGCCAAGTAGCTAAGAAAGTCTTAACCGTCGGTGCTAG
TGGAGAGCTTCATCCATCAAGATTCTGTGAGAAGGATCTGCTCAAAGCGG
CTGATCGCGAACACGTCTTTGCATACATTGATGACCCCTGCAGTGCTACC
TATCCATTGATGCAAAAGCTAAGGCAAGTACTTGTTGAGCACGCACTGAA
CAATGGAGAGAACGAGAAGACTGCCAACTCTTCAATCTTCCAGAAGATTG
CAGCCTTTGAGGAGGAATTGAAAACCGTTTTGCCGAAAGAAGTTGAGAAT
GCCAGGCAGACTGTTGAGAATGGAAGT
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