CX295156

Overview
NameCX295156
Unique NameCX295156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295156_ssr114 microsatellite CX295156_ssr114:114..125. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295156_ssr174 microsatellite CX295156_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15280 contig Ccv1_Contig15280:6..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 91/151 (60.26%), Postives = 119/151 (78.81%), Query Frame = 1
Query:  214 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQ-HGIICMEDLIHEILTVGPHFR 663
            R ++Y  EY + ++  I+L+R AK +  FYV  EAKL F++RIRGIN V PK +K+LQL RLRQI NGVF+K+NKAT+NML   EPY+T+GYPNLKSV+ELIYKRG+ K N+QR+ +TDN +IE+ L Q H I C+EDL+HEI TVGP+F+
Sbjct:   56 RAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFK 206          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.393e-47
Identity = 85/157 (54.14%), Postives = 120/157 (76.43%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRR 666
            R  I  R   + KEY+  ++ +I  KREAK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV YGYP+  +V++L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++DLIHEI+TVGPHF++
Sbjct:   41 RAAILERNAAHQKEYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQ 197          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 87/158 (55.06%), Postives = 119/158 (75.32%), Query Frame = 1
Query:  193 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHF+
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFK 202          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 87/158 (55.06%), Postives = 119/158 (75.32%), Query Frame = 1
Query:  193 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHF+
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFK 202          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 86/159 (54.09%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQT 672
            RK  + R + +   Y + ++E IRL R AK KG  +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV YG PNL SV+ELIYKRG+GK+N QRIAL+DN++IE+ALG++ +I +ED+IHEI  VG HF+  T
Sbjct:   47 RKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVT 205          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.246e-32
Identity = 70/150 (46.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:  214 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            R + +  E+  ++ ++IR+K+  K         ++ L+FIIRI+G N + PKTK+IL  L+L+ +F GVF K   +    L +V+PYVTYGYPN KSVK+LIYK+G   +    + LTDN+IIEQALG+H I+ +EDL++EI  VG HFR
Sbjct:   51 RPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFR 200          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 66/154 (42.86%), Postives = 101/154 (65.58%), Query Frame = 1
Query:  202 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            L + R + +  +   ++++++RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+
Sbjct:   47 LRFKRLESFLHDSWRQKRDMVRLRRLEMKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQ 200          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 66/154 (42.86%), Postives = 100/154 (64.94%), Query Frame = 1
Query:  202 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            L + R + +  +   ++++ +RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+
Sbjct:   47 LRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQ 200          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 64/152 (42.11%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  208 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            + R + +  +   +Q++ +R++R         V  +  L F+IR+  I  V    K  +  L L+++F+GVF+KV   ++ ML  VEPYVT+G+PNLKSV+ELI KRG  K+N + + LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+
Sbjct:   49 FRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQ 200          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 65/156 (41.67%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            ++L + R + +  +   + ++ +RL+R      G  V  +  L F++RI  I+ V    ++ +  LRL++IF+GVF++V   T+  L  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G +F+
Sbjct:   46 KELKFKRLEWFLHDSWRQLRDRVRLRRLEVKPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQ 201          
The following BLAST results are available for this feature:
BLAST of CX295156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_DROME5.507e-4760.2660S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7_CANGA9.393e-4754.1460S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL72_PARTE2.314e-4555.0660S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE2.314e-4555.0660S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO9.721e-4454.0960S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH2.246e-3246.6760S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_PONAB5.532e-3142.8660S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_HUMAN2.102e-3042.8660S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_MOUSE2.746e-3042.1160S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_PIG1.043e-2941.6760S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC05069B09SK PhIFruit1 Citrus clementina cDNA clone C05069B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295156 ID=CX295156; Name=CX295156; organism=Citrus clementina; type=EST; length=694bp
GGCGCGAAGCCAGAACGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCT
AAGAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTAC
CAGAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCC
AAGAAGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAA
GCTCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGC
AAAAAGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTT
TATGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTAT
CAATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGA
GACAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAAT
ATGCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAA
GAGTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGC
AGAGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAG
CATGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGG
TCCTCACTTCAGGAGGCAAACACTTCCTATGGCCCTTCAGCTCA
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