CX295156

Overview
NameCX295156
Unique NameCX295156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 62/155 (40.00%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  232 KEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVD--PKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQT 672
            ++ DEE +E   L RE  +  G     E  LLF+IR++G  AV    K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S++ LI KR      +      + I L DN+I+E+ LG  G+IC+ED+IHEI T+G +F + T
Sbjct:  112 QDVDEEDEEDDGLIREKIVYDG-----EPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCT 261          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  322 LLFIIRIRGINAVDPKTK--KILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHF 660
            LLFI+R+RG  AV+   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S++ LI KRG        +     I L DN+I+E+ LG HGIIC+ED+IHEI T+G  F
Sbjct:  141 LLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESF 261          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 51/128 (39.84%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  307 NPEAKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRG---YGKLNKQ---RIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRR 666
            N E +LLF++R++G  A  +  K  +IL  LRL ++   VF+K+ + T ++L  + PYV  G P+LKS++ LI KR    Y + +++    I L DN+I+E+ LG  G+IC++D+IHEI T+G +F +
Sbjct:  131 NGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTK 258          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  316 AKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRR 666
            A LLF++R+RG  A  +  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S++ L+ KR        G+     + L DN ++E+ LG  G+IC+ED+IHEI T+G  F +
Sbjct:  110 ATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAK 234          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  316 AKLLFIIRI----RGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY-----GKLNKQRIA-LTDNSIIEQALGQH-GIICMEDLIHEILTVGPHFR 663
            AKLLFIIRI    +G+  V  K +K+L LLRL +   GVF+K+  AT+ +L  + PY+  G P+L S+++L  KR        +  + RI  L +N ++E   G   G IC+EDLIHE+ T+G HF+
Sbjct:   92 AKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFK 217          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 47/150 (31.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  217 TKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRR 666
            T++   +Y E+++E+  L++++ +K GFYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+T  ML  ++ +V +G   ++ +++L+Y +G G+    R+ LT+  I +   G+  I C+E+L+H I      F++
Sbjct:   48 TEKLLNKYYEQEREI--LEKKSSMKNGFYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKK 193          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  322 LLFIIRIRG-INAVDP-KTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKL------NKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQT 672
            L  I+R  G + A  P K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++V++L+ KR    +        +++ L DN+++E+ LG  GIIC+ED+IHE   +   F+  T
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFKTVT 156          
The following BLAST results are available for this feature:
BLAST of CX295156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_KLULA1.366e-2140.00Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_YEAST3.043e-2147.11Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_CANGA9.788e-2039.84Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_ASHGO1.846e-1838.40Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RLP7_DEBHA7.756e-1741.73Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RL7_ENCCU1.323e-1631.3360S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_PICJA1.238e-1436.00Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionC05069B09SK PhIFruit1 Citrus clementina cDNA clone C05069B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295156 ID=CX295156; Name=CX295156; organism=Citrus clementina; type=EST; length=694bp
GGCGCGAAGCCAGAACGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCT
AAGAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTAC
CAGAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCC
AAGAAGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAA
GCTCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGC
AAAAAGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTT
TATGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTAT
CAATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGA
GACAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAAT
ATGCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAA
GAGTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGC
AGAGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAG
CATGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGG
TCCTCACTTCAGGAGGCAAACACTTCCTATGGCCCTTCAGCTCA
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