CX295168 | Citrus Genome Database

Overview


Name	CX295168
Unique Name	CX295168
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	705

Libraries


Library Name	Type
PhIFruit1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_PIPCE (ATP synthase subunit c, chloroplastic OS=Piper cenocladum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_PHYPA (ATP synthase subunit c, chloroplastic OS=Physcomitrella patens GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_PHAAO (ATP synthase subunit c, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_PELHO (ATP synthase subunit c, chloroplastic OS=Pelargonium hortorum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_PANGI (ATP synthase subunit c, chloroplastic OS=Panax ginseng GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_OENPA (ATP synthase subunit c, chloroplastic OS=Oenothera parviflora GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_OENGL (ATP synthase subunit c, chloroplastic OS=Oenothera glazioviana GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_OENEH (ATP synthase subunit c, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_OENBI (ATP synthase subunit c, chloroplastic OS=Oenothera biennis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_OENAR (ATP synthase subunit c, chloroplastic OS=Oenothera argillicola GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CX295168 vs. ExPASy Swiss-Prot

BLAST of CX295168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_PIPCE	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Piper cen...	[more]
ATPH_PHYPA	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Physcomit...	[more]
ATPH_PHAAO	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Phalaenop...	[more]
ATPH_PELHO	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Pelargoni...	[more]
ATPH_PANGI	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Panax gin...	[more]
ATPH_OENPA	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]
ATPH_OENGL	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]
ATPH_OENEH	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]
ATPH_OENBI	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]
ATPH_OENAR	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]

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Properties


Property Name	Value
Genbank description	C05069C09SK PhIFruit1 Citrus clementina cDNA clone C05069C09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX295168 ID=CX295168; Name=CX295168; organism=Citrus clementina; type=EST; length=705bp
GGACTAAAGATATATCTAATCCACCCTACTCTTGTGATTATTGTGAATTT
CGATAGGGATTCTAATAGAAATTGTTCGATTTCGTCTTTGCTTTGATGCT
TTGACTGGGAATTGAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACG
AACGAAGAATTCAAAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAG
TCGTATGGATTTACAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAA
AAAGAGATATCTAAAAAGTTTTGATGGTTCAATAATAATATTATTATTAC
GCCAATTGGGAGTTCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGA
ATAATTAAGTCATAATTTATTGGACGATTGTATCATTAACGATTTCTTTA
GTTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCT
GCCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGG
ACCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCG
CGAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGT
CTGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGC
ACTTTTATTTGCGAATCCTTTTGTTTATCCTAGAATAGGAAGGGCATTTA
CATTT