CX295169

Overview
NameCX295169
Unique NameCX295169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig621 contig Ccv1_Contig621:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295169 vs. ExPASy Swiss-Prot
Match: FBL64_ARATH (F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/203 (26.11%), Postives = 93/203 (45.81%), Query Frame = 3 
Query:  141 DWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSE------YVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFE---LDFWPPSHI--------------NDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEF--FIHSCPHLEHLYVAN 674
            D  S  P+ ++ +++S L  KEAA TSVLS +W+YL+ + T LDF     D  +   + KS+      ++ +V+++L+L    ++NKF + C+  +     +T WI     + V   +   L++  PS I              ND    L+R +          +  L++L ++ + V      F   +  CP LE L + N
Sbjct:    7 DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDF----DDSDYQDGKPKSDVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDLSILEYPLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVF--------LPKLKTLYIDCVDVQERGFGFVKLLSGCPVLEELVLMN 197
The following BLAST results are available for this feature:
BLAST of CX295169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FBL64_ARATH8.517e-1126.11F-box/LRR-repeat protein At3g59200 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05069C10SK PhIFruit1 Citrus clementina cDNA clone C05069C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295169 ID=CX295169; Name=CX295169; organism=Citrus clementina; type=EST; length=706bp
GCCGAATGCTTCGAATCAGCTAAAAGGGCAACAGTTACCGTAGAGTCAAA
ATCCGCTGAAAGCTTTTGCACGCAGAGCAAATGACTAAGAGAGCCCGGCT
GACACCTGCAGATACCCCAGAAAAGAAGGAAAATATGGAGGATTGGTTCA
GTAAATTCCCAGATGATATTCTTGTTAATCTTATATCTCGTTTAACACTT
AAAGAAGCTGCAAGGACTAGCGTCCTTTCAAGTAGATGGAAATACTTGTG
GAATTTTACCACTGCTCTCGACTTTGCTGGAATAGGAAAGGATATAATAT
TCCCAAGTAAAGAAGAAAAAAGTGAGTACGTTTGCTGGGTGAATAAAATT
TTGAGCTTGCATAAAGGTTCAAATATAAATAAGTTTCGAATACGTTGTAC
TCTGGATAATTCACACGGAAGGGACATCACCAATTGGATTTACACAGCAA
CAGCAAAGAAAGTTCAAAACTTTGAGTTGGATTTTTGGCCACCATCTCAT
ATTAATGATTATGCATTTCCGCTAGAGCGGTACAACTTCCTTAAAAGAGG
GCATGGTTTGTCTGGCATTAAGTCACTAAGATCCCTCTGCCTTAATGCTC
TGAAAGTCAGTGGAGAAGTGCTTGAGTTTTTTATACACAGTTGTCCACAT
TTGGAACACTTATACGTGGCCAATTCTTCAGAGTTATTAGCTTTGAGGTT
GTTGGT
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