CX295180

Overview
NameCX295180
Unique NameCX295180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.384e-28
Identity = 73/207 (35.27%), Postives = 115/207 (55.56%), Query Frame = 3
Query:   21 TRESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE 641
            T + F+ + D+ G+FK S  +D  +G+                I  DA+ FT + L   + K     N    L T ++ AL+ PL  R+ R+EA  +I  Y+     N  LL+LAK+++N++Q++H E+L +V +WWK   + +     RDR+VE +FW +G  +EPQ+   R        ++TLIDD YD YGT +EL++FT+AVE
Sbjct:  118 TCDVFNNYKDKNGAFKQSLAND-VEGLLELYEATSMRVPG-EIILEDALGFTRSRLSI-MTKDAFSTNPA--LFTEIQRALKQPLWKRLPRIEAAQYIPFYQQQDSHNKTLLKLAKLEFNLLQSLHKEELSHVCKWWKAFDIKKNAPCLRDRIVECYFWGLGSGYEPQYSRARVFFTKAVAVITLIDDTYDAYGTYEELKIFTEAVE 319          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 73/220 (33.18%), Postives = 118/220 (53.64%), Query Frame = 3
Query:   42 FMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSS-----IFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESG-----PDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVLDLPNNM 671
            F DE G F  +   +E +G                S     +  +A  FT  YL + +A H    + D+ L   VK+ALE P H  + R EAR F+++Y         ++N  +L+LAK+D+NI+Q  H +++++++RWW+ +G+ + LNF R R VE + W V  IFEP+F   R   A    L T++DD+YD + TL E+++ T+ V    L L +++
Sbjct:  143 FKDENGKFFCNFTGEEGRGDKQVRSMLSLLRASEISFPGEKVMEEAKAFTREYLNQVLAGHGDVTDVDQSLLREVKYALEFPWHCSVPRWEARSFLEIYGHNHSWLKSNINQKMLKLAKLDFNILQCKHHKEIQFITRWWRDSGISQ-LNFYRKRHVEYYSWVVMCIFEPEFSESRIAFAKTAILCTVLDDLYDTHATLHEIKIMTEGVRRWDLSLTDDL 361          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD1_ABIGR (Alpha-bisabolene synthase OS=Abies grandis GN=ag1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 74/197 (37.56%), Postives = 112/197 (56.85%), Query Frame = 3
Query:  147 SIFRDAIRFTTAYLKEWVAKHDIDK--NDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDM--------------NPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQL 677
            +I  +A  F T YL+E + K +     N+ + L   +K+AL+   H  + R+EA+ +  VY   PD               N   LEL K+D+NI+Q+IH E++K V+ W++ +GL     FAR+R +E +F      +EPQ+  CR +   V CL T++DD+YD YGTLDEL+LFT+AV     S   +LP+ M+L
Sbjct:  409 NILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYR--PDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKL 602          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 76/225 (33.78%), Postives = 119/225 (52.89%), Query Frame = 3
Query:   15 FGTRESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVL----DLPNNMQL 677
            F + + FS + D++G FK S   D   G+                I  DA+ FT   L E +AK+    N    + + ++ AL  PLH R+ RLEA  +I  Y+     +  LL+LAK+ +N +Q++H ++L  +S+WWK   +   L +AR+R VE +FW +   FEPQ+   R   +    + T +DD YD YGT +ELE FT+A++   +     LP +M+L
Sbjct:  116 FVSSDIFSTYKDKEGRFKESLEKD-VHGLLELYEAAYMFVPG-EGILDDALVFTRTCLDE-IAKNPSLSNSA--VSSQIREALTQPLHKRLPRLEALRYIPFYQQQASHSETLLKLAKLGFNQLQSLHKKELSIISKWWKSFDVANNLPYARNRPVECYFWALAVYFEPQYSESRVFLSRFFSIQTFLDDTYDAYGTYEELEQFTEAIQRWSITCLDGLPESMKL 335          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD5_ABIGR (Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 71/185 (38.38%), Postives = 112/185 (60.54%), Query Frame = 3
Query:  150 IFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVY-----ESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQL 677
            +  +A  FTT YLK+ +A  +   + DE L   VK+ALE P H  ++R EAR FI+++     E   +++  +LELAK+D+NI+Q  H ++L+ +SRW+  + +   LNF R   VE +FW    I EP+F   R     +  L+T++DD+YD +GTLD+L++FT+ V     S V  LP+ M++
Sbjct:  197 VMEEAKAFTTNYLKKVLAGREAT-HVDESLLGEVKYALEFPWHCSVQRWEARSFIEIFGQIDSELKSNLSKKMLELAKLDFNILQCTHQKELQIISRWFADSSIAS-LNFYRKCYVEFYFWMAAAISEPEFSGSRVAFTKIAILMTMLDDLYDTHGTLDQLKIFTEGVRRWDVSLVEGLPDFMKI 379          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 72/194 (37.11%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  150 IFRDAIRFTTAYLKEWVAKHD-IDK-NDDEYLCTLVKHALELPLHWRMRRLEARWFID------------VYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAV---ESHVLDLPNNMQLR 680
            I  +A  FTT +L+  +AK++  DK    + L   V++A++ P H  M RLEAR +I+            VY+     N   LELAK+D+N+VQA+H ++ +++  WW+++G  + L F R R VE +F     +FEP+F  CR   A  +CL  ++DD+YD +G+LD+L+LF++AV   +  VLD   + QL+
Sbjct:  468 IMEEAKTFTTNHLQNALAKNNAFDKWAVKKDLPGEVEYAIKYPWHRSMPRLEARSYIEQFGSNDVWLGKTVYKMLYVSNEKYLELAKLDFNMVQALHQKETQHIVSWWRESGFND-LTFTRQRPVEMYFSVAVSMFEPEFAACRIAYAKTSCLAVILDDLYDTHGSLDDLKLFSEAVRRWDISVLDSVRDNQLK 660          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 65/155 (41.94%), Postives = 95/155 (61.29%), Query Frame = 3
Query:  249 VKHALELPLHWRMRRLEARWFIDVYESGPD---------MNPIL-----LELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVLDLPNNM 671
            V++AL+ P H  M RLEAR +I+ Y  GP+         M P +     LELAK+D+N VQ++H ++L+ + RWWK +GL E L F R+RV E +F     IFEP+F  CR +   ++    ++DD+YD +GTLD LELF++ V+   L L + M
Sbjct:  498 VEYALKYPWHRSMPRLEARSYIEHY--GPNDVWLGKTMYMMPYISNLKYLELAKLDFNHVQSLHQKELRDLRRWWKSSGLSE-LKFTRERVTEIYFSAASFIFEPEFATCRDVYTKISIFTVILDDLYDAHGTLDNLELFSEGVKRWDLSLVDRM 649          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSDV_ABIGR (Abietadiene synthase, chloroplastic OS=Abies grandis GN=ag22 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 64/155 (41.29%), Postives = 93/155 (60.00%), Query Frame = 3
Query:  249 VKHALELPLHWRMRRLEARWFIDVYESGPD--------------MNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVLDLPNNM 671
            V++AL+ P H  M RLEAR +I+ Y  GPD               N   LELAK+D+N VQ+IH  +L+ + RWWK +G  + LNF R+RV E +F     IFEP+F  CR +    +    ++DD+YD +G+LD+L+LFT++V+   L L + M
Sbjct:  500 VEYALKYPWHKSMPRLEARSYIENY--GPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTD-LNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQM 651          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24
Identity = 71/188 (37.77%), Postives = 108/188 (57.45%), Query Frame = 3
Query:  159 DAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESG-----------PDM-NPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQ 674
            DA +F   YL+E +A   I  N    L   +++ +E P H  + RLEAR +ID Y+             P + N   LELAK+D+NIVQ++H E+LK ++RWWK++G+ + +NF R RV E +F +    FEP++   R     + CL  L DD+ D++ TLDEL+ FT+ V+    S + ++P  MQ
Sbjct:  467 DARKFAEPYLREALATK-ISTNTK--LFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQ 648          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 3
Query:  159 DAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESG-----------PDM-NPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQ 674
            DA +F   YL++ +A   I  N   Y    +++ +E P H  + RLEAR +ID Y+             P + N   LELAK+D+NIVQ++H E+LK ++RWWK++G+ + +NF R RV E +F +    FEP++   R     + CL  L DD+ D++ TLDEL+ FT+ V+    S + ++P  MQ
Sbjct:  467 DARKFAEPYLRDALATK-ISTNTKLY--KEIEYVVEYPWHMSIPRLEARSYIDSYDDDYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQ 648          
The following BLAST results are available for this feature:
BLAST of CX295180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
AMS1_ARTAN4.384e-2835.27Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]
TPSD4_ABIGR2.176e-2733.18Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]
TPSD1_ABIGR4.847e-2737.56Alpha-bisabolene synthase OS=Abies grandis GN=ag1 ... [more]
ECS1_ARTAN4.847e-2733.78Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]
TPSD5_ABIGR1.080e-2638.38Gamma-humulene synthase OS=Abies grandis GN=ag5 PE... [more]
TPSD1_GINBI3.473e-2537.11Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
TPSD2_PICAB4.536e-2541.94Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]
TPSDV_ABIGR1.320e-2441.29Abietadiene synthase, chloroplastic OS=Abies grand... [more]
TASY_TAXBR2.940e-2437.77Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]
TASY_TAXBA5.016e-2437.23Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC05069D09SK PhIFruit1 Citrus clementina cDNA clone C05069D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295180 ID=CX295180; Name=CX295180; organism=Citrus clementina; type=EST; length=695bp
GGCCTCGTGCCGAATTCGGCACGAGGGAAAGTTTTTCACGTTTCATGGAT
GAGAAGGGGAGCTTTAAGTTATCAAGCCACAGTGACGAATGCAAAGGAAT
GTTAGCTCTGTATGAAGCTGCATACCTCCTGGTAGAAGAAGAAAGCAGTA
TCTTTCGTGACGCTATAAGGTTCACCACCGCATATCTCAAAGAATGGGTG
GCCAAGCATGATATTGACAAAAATGATGATGAATATCTTTGTACATTAGT
GAAACATGCTTTGGAACTTCCACTACATTGGAGGATGCGAAGATTGGAGG
CAAGGTGGTTCATCGATGTATACGAAAGTGGACCAGACATGAACCCTATC
TTGCTCGAGCTTGCTAAAGTTGACTATAATATTGTGCAAGCAATACACTA
AGAGGATCTCAAATATGTGTCAAGGTGGTGGAAGAAAACAGGACTTGGGG
AGAAGTTGAATTTTGCAAGAGACAGAGTAGTGGAGAATTTCTTCTGGACC
GTGGGGGATATATTCGAACCTCAGTTTGGATATTGTAGAAGGATGTCTGC
AATGGTTAATTGTCTTTTAACATTAATCGATGATGTTTATGATGTCTATG
GGACCTTGGACGAACTTGAGCTATTCACTGATGCAGTTGAGAGTCATGTA
CTAGATCTCCCAAATAACATGCAGTTGCGTACTATAGACTCATGA
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