CX295180

Overview
NameCX295180
Unique NameCX295180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.251e-23
Identity = 61/155 (39.35%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  249 VKHALELPLHWRMRRLEARWFIDVYESGPD--------------MNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVLDLPNNM 671
            V++AL+ P H  M RLEAR +I+ Y  GP+               N   LELAK+D+N VQ++H ++L+ + RWW  +G  E L F R+RV E +F     +FEP+F  CR +    +    ++DD+YD +GTLD+L+LF+D+V+   L L + M
Sbjct:  490 VEYALKYPWHRSMPRLEARSYIEHY--GPNDVWLGKTMYMMPYISNEKYLELAKLDFNHVQSLHQKELRDLRRWWTSSGFTE-LKFTRERVTEIYFSPASFMFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDDLKLFSDSVKKWDLSLVDRM 641          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 69/188 (36.70%), Postives = 107/188 (56.91%), Query Frame = 3
Query:  159 DAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESG-----------PDM-NPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQ 674
            DA +F   YL++ +A   I  N    L   +++ +E P H  + R EAR +ID Y+             P + N   LELAK+D+NIVQ++H E+LK ++RWWK++G+ + +NF R RV E +F +    FEP++   R     + CL  L DD+ D++ TLDEL+ FT+ V+    S + ++P  MQ
Sbjct:  467 DARKFAEPYLRDALATK-ISTNTK--LFKEIEYVVEYPWHMSIPRSEARSYIDSYDDDYVWERKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQ 648          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  249 VKHALELPLHWRMRRLEARWFIDVYESGPD--------------MNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVLDLPNNM 671
            V++AL+ P H  M RLEAR +I+ Y  GP+               N   LELAK+D+N VQ  H ++L+ + RWW  +G  + L F R+RV E +F     +FEP+F  CR +    +    ++DD+YD +GTLD L+LF+++V+   L L + M
Sbjct:  481 VEYALKYPWHRSMPRLEARSYIENY--GPNDVWLGKTMYMMPNISNEKYLELAKLDFNRVQFFHRQELQDIRRWWNSSGFSQ-LGFTRERVAEIYFSPASFLFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDNLKLFSESVKRWDLSLVDQM 632          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD2_ABIGR (Myrcene synthase, chloroplastic OS=Abies grandis GN=ag2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 66/185 (35.68%), Postives = 101/185 (54.59%), Query Frame = 3
Query:  150 IFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYES------GPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQ 674
            +  +A  F+T YLKE + K  +     E     +K  +E   H  + RLEAR +ID  E         +    LLELAK+++NI  ++  ++L+Y+ RWWK++ L  KL FAR R VE +        +P+    R   A +  L+T++DD+YD +GT+DELELFT A++    S +  LP  M+
Sbjct:  235 VMEEAEIFSTRYLKEALQKIPVSALSQE-----IKFVMEYGWHTNLPRLEARNYIDTLEKDTSAWLNKNAGKKLLELAKLEFNIFNSLQQKELQYLLRWWKESDL-PKLTFARHRHVEFYTLASCIAIDPKHSAFRLGFAKMCHLVTVLDDIYDTFGTIDELELFTSAIKRWNSSEIEHLPEYMK 413          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD6_ABIGR (Camphene synthase, chloroplastic OS=Abies grandis GN=ag6 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 62/167 (37.13%), Postives = 94/167 (56.29%), Query Frame = 3
Query:  150 IFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVY---ESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE 641
            +  +A  F+T YL+E + K          L   ++  LE   H  + RLEAR ++DV+       +    LLELAK+++NI  ++   +LK+VSRWWK +G  E + F R R VE +       FEPQ    R     ++ L+T++DD+YDV+GT+DELELFT  ++
Sbjct:  228 VMDEAETFSTKYLREALQKIPASS----ILSLEIRDVLEYGWHTNLPRLEARNYMDVFGQHTKNKNAAEKLLELAKLEFNIFHSLQERELKHVSRWWKDSGSPE-MTFCRHRHVEYYALASCIAFEPQHSGFRLGFTKMSHLITVLDDMYDVFGTVDELELFTATIK 389          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   33 FSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKL--NFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVLDLPNNMQ 674
            F  F  + G FK  S  ++ KGM                I  +A+ FT  +L+         +    ++  L+++AL +P H  ++ L AR +I  YE   D +  LL+LAK+++  +Q  + ++LK ++ WW K      L  NF R+R VE +F  +   FEPQF   R MSA +  ++T +DD  D YG++ E+E   D +E    D   N+Q
Sbjct:  132 FKIFKGDDGKFK-ESLIEDVKGMLSFYEAVHFGTTT-DHILDEALSFTLNHLESLATGR---RASPPHISKLIQNALHIPQHRNIQALVAREYISFYEHEEDHDETLLKLAKLNFKFLQLHYFQELKTITMWWTKLDHTSNLPPNF-RERTVETWFAALMMYFEPQFSLGRIMSAKLYLVITFLDDACDTYGSISEVESLADCLERWDPDYMENLQ 341          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 63/171 (36.84%), Postives = 94/171 (54.97%), Query Frame = 3
Query:  150 IFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVY-----ESGPDMNPI----LLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDA 635
            +  +A  F+ +YLKE + K  +     E     +++ LE   H  + RLEAR +IDVY     ES  +M  +    LL+LAK+++NI  ++  ++L+Y+SRWWK +     L F R R VE +        EP+    R        LLT++DD+YD +GTLDEL+LFT A
Sbjct:  242 VMEEAEIFSASYLKEVLQKIPVSSFSRE-----IEYVLEYGWHTNLPRLEARNYIDVYGQDSYESSNEMPYVNTQKLLKLAKLEFNIFHSLQQKELQYISRWWKDS-CSSHLTFTRHRHVEYYTMASCISMEPKHSAFRLGFVKTCHLLTVLDDMYDTFGTLDELQLFTTA 406          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 60/173 (34.68%), Postives = 97/173 (56.07%), Query Frame = 3
Query:  150 IFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESG--------PDMN-PILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE 641
            +  +A  F+ +YLK+ + K  +     E     +++ LE   H  + RLEAR +I+VYE          P MN   LL+LAK+++NI  ++   +L+ +SRWWK++G   +L F R R VE +         P+    R     V  L+T++DD+YD +GT++EL+LFTDA++
Sbjct:  242 VMEEAEIFSASYLKKVLQKIPVSNLSGE-----IEYVLEYGWHTNLPRLEARNYIEVYEQSGYESLNEMPYMNMKKLLQLAKLEFNIFHSLQLRELQSISRWWKESG-SSQLTFTRHRHVEYYTMASCISMLPKHSAFRMEFVKVCHLVTVLDDIYDTFGTMNELQLFTDAIK 408          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 63/176 (35.80%), Postives = 95/176 (53.98%), Query Frame = 3
Query:  150 IFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPIL-------------LELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAV 638
            +  +A  F++ YLKE V K  +     E     + + LE   H  M RLE R ++DV+  G   +P L             LELAK+++NI  ++  ++L+Y+SRWW  +GL E L F R R VE +  +     EP+    R   A    L+T++DD+YD +GT+DE+ELF +AV
Sbjct:  233 VMEEAEIFSSRYLKEAVQKIPVSSLSQE-----IDYTLEYGWHTNMPRLETRNYLDVF--GHPTSPWLKKKRTQYLDSEKLLELAKLEFNIFHSLQQKELQYLSRWWIHSGLPE-LTFGRHRHVEYYTLSSCIATEPKHSAFRLGFAKTCHLITVLDDIYDTFGTMDEIELFNEAV 400          
BLAST of CX295180 vs. ExPASy Swiss-Prot
Match: GBIS2_ARATH ((Z)-gamma-bisabolene synthase 2 OS=Arabidopsis thaliana GN=TPS13 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 63/204 (30.88%), Postives = 106/204 (51.96%), Query Frame = 3
Query:   33 FSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKL-NFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE 641
            F RF  + G F+ S  +++ KG+                I  +A+ FT+++LK  +    +      ++  L+++ L LP  W M  + AR +I  YE   D + +LL LAK+++ ++Q  + ++LK   +WW + GL  K  +  R+R+VE +   +   FEPQF   R ++A  N LLT++DD  D Y ++ EL    D VE
Sbjct:  129 FKRFTGDDGKFERSL-TEDAKGILSLYEAAHLGTTT-DYILDEALEFTSSHLKSLL----VGGMCRPHILRLIRNTLYLPQRWNMEAVIAREYISFYEQEEDHDKMLLRLAKLNFKLLQLHYIKELKTFIKWWMELGLTSKWPSQFRERIVEAWLAGLMMYFEPQFSGGRVIAAKFNYLLTILDDACDHYFSIPELTRLVDCVE 326          
The following BLAST results are available for this feature:
BLAST of CX295180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
TPSD1_PICAB3.251e-2339.35Levopimaradiene synthase, chloroplastic OS=Picea a... [more]
TASY_TAXCH4.246e-2336.70Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
TPSD1_PINTA3.594e-2238.06Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
TPSD2_ABIGR3.043e-2135.68Myrcene synthase, chloroplastic OS=Abies grandis G... [more]
TPSD6_ABIGR1.156e-2037.13Camphene synthase, chloroplastic OS=Abies grandis ... [more]
BARS_ARATH4.394e-2031.02Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]
TPSDB_ABIGR9.788e-2036.84Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
TPSDA_ABIGR9.788e-2034.68Limonene synthase, chloroplastic OS=Abies grandis ... [more]
TPSD8_ABIGR2.181e-1935.80Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
GBIS2_ARATH4.858e-1930.88(Z)-gamma-bisabolene synthase 2 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC05069D09SK PhIFruit1 Citrus clementina cDNA clone C05069D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295180 ID=CX295180; Name=CX295180; organism=Citrus clementina; type=EST; length=695bp
GGCCTCGTGCCGAATTCGGCACGAGGGAAAGTTTTTCACGTTTCATGGAT
GAGAAGGGGAGCTTTAAGTTATCAAGCCACAGTGACGAATGCAAAGGAAT
GTTAGCTCTGTATGAAGCTGCATACCTCCTGGTAGAAGAAGAAAGCAGTA
TCTTTCGTGACGCTATAAGGTTCACCACCGCATATCTCAAAGAATGGGTG
GCCAAGCATGATATTGACAAAAATGATGATGAATATCTTTGTACATTAGT
GAAACATGCTTTGGAACTTCCACTACATTGGAGGATGCGAAGATTGGAGG
CAAGGTGGTTCATCGATGTATACGAAAGTGGACCAGACATGAACCCTATC
TTGCTCGAGCTTGCTAAAGTTGACTATAATATTGTGCAAGCAATACACTA
AGAGGATCTCAAATATGTGTCAAGGTGGTGGAAGAAAACAGGACTTGGGG
AGAAGTTGAATTTTGCAAGAGACAGAGTAGTGGAGAATTTCTTCTGGACC
GTGGGGGATATATTCGAACCTCAGTTTGGATATTGTAGAAGGATGTCTGC
AATGGTTAATTGTCTTTTAACATTAATCGATGATGTTTATGATGTCTATG
GGACCTTGGACGAACTTGAGCTATTCACTGATGCAGTTGAGAGTCATGTA
CTAGATCTCCCAAATAACATGCAGTTGCGTACTATAGACTCATGA
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