CX295195

Overview
NameCX295195
Unique NameCX295195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.684e-28
Identity = 61/122 (50.00%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  126 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++                    RGPIQLT K NY
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSD------------PPYYGRGPIQLTHKYNY 135          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.200e-28
Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  126 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD--XXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R+     D                  RGPIQ+++  NY
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY 128          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.426e-27
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  108 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXXXXXXXXRGPIQLTWKCNYLR 497
            GT     G I++RE+FE +L +RN++ C A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYC++RQ+                     RGPIQLT + NY R
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-------------RYYGRGPIQLTHQSNYER 133          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.432e-27
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  108 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXXXXXXXXRGPIQLTWKCNYLR 497
            GT     G I++RE+FE +L +RN++ C A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYC+++Q+                     RGPIQLT + NY R
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-------------RYYGRGPIQLTHQSNYER 133          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.176e-27
Identity = 66/151 (43.71%), Postives = 82/151 (54.30%), Query Frame = 3
Query:   54 SAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQ--VSHGSD--XXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            SA  CG G       +G    G  +  I+SR +F+ +L +RND  C A  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYC+  +   + G D                  RGPIQL++  NY
Sbjct:   61 SAAGCGGGGPTPPSGSG----GSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY 207          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.242e-27
Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  108 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            G+   ++G I++ ++F ++L  RND+RC A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYC++R+ +                    RGPIQLT + NY
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQ------------MGSGFYGRGPIQLTGQSNY 127          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.689e-26
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  108 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYC++R+ +   +                RGPIQLT + NY
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGN------------GYYGRGPIQLTGQSNY 134          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.335e-25
Identity = 55/133 (41.35%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  102 GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            G+      +  I+S +++  L  +++D  C ARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++  S   D                RGPIQ++W  NY
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNY 173          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.130e-24
Identity = 58/122 (47.54%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  126 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            +G I++ ++F ++L  RND RC A GFYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYC++RQ                      RGPIQLT + NY
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-------------RYYGRGPIQLTNQNNY 133          
BLAST of CX295195 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.517e-24
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  126 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXXXXXXXXRGPIQLTWKCNY 491
            +G I++ ++F ++L  RND RC A GFYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYC++RQ                      RGPIQLT + NY
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-------------RYYGRGPIQLTNRNNY 133          
The following BLAST results are available for this feature:
BLAST of CX295195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CHI11_ORYSJ1.684e-2850.00Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHID_SOLLC2.200e-2847.58Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIA_SOLCI1.426e-2746.92Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC2.432e-2746.15Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ3.176e-2743.71Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC9.242e-2746.88Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY2.689e-2647.66Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI10_ORYSJ1.335e-2541.35Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC1.130e-2447.54Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC2.517e-2446.72Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC05069F04SK PhIFruit1 Citrus clementina cDNA clone C05069F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295195 ID=CX295195; Name=CX295195; organism=Citrus clementina; type=EST; length=500bp
TCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGA
GGTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATAC
TGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGG
GTCCGACTACTGATATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACT
ATGGCCGAGGTCCAATTCAACTCACTTGGAAATGCAATTACTTAAGGTGC
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