CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33
Identity = 78/160 (48.75%), Postives = 102/160 (63.75%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  LT  L      + G   LT++N+ + +R++R ALLEADV+LPVVR F+  V E+AVG  + + + P Q+ VKIVR+ELV  MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI QL  L EQVGV  +
Sbjct:    1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ffh PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 70/162 (43.21%), Postives = 109/162 (67.28%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIA 665
            MF  LT  L  +  K+  +  LT+ENI + +R++R+ALLEADV+L V+++F+Q VS++A+G  + + + P Q+ +KIV++EL+  MG +  +L  +   P +IL+ GLQGVGKTT   KLA ++K K  K  + V+ D+YR AAI QL IL +QV +  Y++
Sbjct:    1 MFNNLTERLSQSLRKIINKGRLTEENIKDTIREVRKALLEADVTLSVIKKFIQNVSKKAIGHEINKSLTPGQEFIKIVKNELILSMGEKNHDLNLSIQPPAIILVVGLQGVGKTTTLVKLAKWIKEKYKKKILTVSTDIYRAAAIKQLQILSDQVKIDFYLS 162          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HAEIN (Signal recognition particle protein OS=Haemophilus influenzae GN=ffh PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 74/160 (46.25%), Postives = 100/160 (62.50%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  L+  L      + G+  LT++NI E +R++R ALLEADV+LPVVR F+  V E A+G  + + + P Q+ +KIV+ EL K MG     L  A   P VIL+AGLQG GKTT   KLA +L+ +  K  ++V+ DVYRPAAI QL  L + VGV  +
Sbjct:    1 MFENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALGEEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFF 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.374e-28
Identity = 66/160 (41.25%), Postives = 104/160 (65.00%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  LT  L  +  K+  +  LT+ENI E +R++R+ALLEADV+L V+++F++ V ++++G  + + + P Q+ +KIV+ EL+  MG +   L F+   P VIL+ GLQG GKTT  AKL  ++K K  K  ++ + D YR AAI+QL IL +Q+ +  +
Sbjct:    1 MFNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIGHEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAKLGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFF 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.100e-28
Identity = 71/158 (44.94%), Postives = 106/158 (67.09%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            MF QL++ L+ A  +L+G   +T+E++   +R+IRRAL++ADV+L V R FV+ V E+A+G  ++  + P + ++  V + L + +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +QL +LGE+VGVPV
Sbjct:    1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.100e-28
Identity = 66/159 (41.51%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M  +L   L  A NKLK    + K+ I E ++DI+RAL++ADV++ +V +  + +  +A+     +G+   + ++KIV +ELVKL+G E  +L     +  VILL G+QG GKTT +AKLA Y++K+G    L+A D YRPAA +QL  L E++ VP+Y
Sbjct:    1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIY 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_RICFE (Signal recognition particle protein OS=Rickettsia felis GN=ffh PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.289e-28
Identity = 70/158 (44.30%), Postives = 96/158 (60.76%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE--LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 650
            MF  LT  L   ++KL     LT+  I   MRDIR ALLE+DV+LPV++ F+  V ++A+G  +I+ V P Q ++KI+ +E++ L+    SE  L      P   L+ GLQG GKTT S+KLA  LK Q K  +LV+ D YRPAA +QL IL   V +
Sbjct:    1 MFKTLTQNLTKIFDKLVSSGILTEAQIDAAMRDIRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLDTYRPAAQEQLAILANSVQI 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.178e-27
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGG--EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 650
            MF  LT  L   ++KL     LT+  I   MRD+R ALLE+DV+LPV++ F++ V ++A+G  +I+ V P Q ++KI+ +E++ L+      ++L      P  +L+ GLQG GKTT S KLA  LK Q K  +LV+ D YRPAA +QL I+   V +
Sbjct:    1 MFKTLTQNLTKIFDKLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIEEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTTASGKLALRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNI 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.178e-27
Identity = 69/158 (43.67%), Postives = 96/158 (60.76%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE--LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 650
            MF  LT  L   ++KL     LT+  I   MRDIR ALLE+DV+LPV++ F+  V ++A+G  +I+ V P Q ++KI+ +E++ L+    SE  L      P   L+ GLQG GKTT S+KLA  L+ Q K  +LV+ D YRPAA +QL IL   V +
Sbjct:    1 MFKTLTQNLTKIFDKLVSSGILTEAQIDAAMRDIRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQI 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_RICBR (Signal recognition particle protein OS=Rickettsia bellii (strain RML369-C) GN=ffh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 68/158 (43.04%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSEL-VFAKSRPTV-ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 650
            MF  LT  L   +++L     LT+E I   +RDIR ALLE+DV+LPV++ FV  V ++A+G  +I+ V P Q ++KI+ +E++ ++     E+ +   ++P V +L+ GLQG GKTT S KLA  LK Q K  +LV+ D YRPAA +QL IL   V +
Sbjct:    1 MFKTLTQNLMKIFDRLVSSGLLTEEQIDAALRDIRVALLESDVALPVIKNFVAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTTASGKLALCLKNQNKKVLLVSLDTYRPAAQEQLEILANSVKI 158          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SRP54_ECO571.437e-3348.75Signal recognition particle protein OS=Escherichia... [more]
SRP54_BUCAP8.717e-3143.21Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_HAEIN1.487e-3046.25Signal recognition particle protein OS=Haemophilus... [more]
SRP54_BUCAI2.374e-2841.25Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_THEAQ3.100e-2844.94Signal recognition particle protein OS=Thermus aqu... [more]
SRP54_METJA3.100e-2841.51Signal recognition 54 kDa protein OS=Methanocaldoc... [more]
SRP54_RICFE5.289e-2844.30Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICPR1.178e-2741.77Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICCN1.178e-2743.67Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICBR2.010e-2743.04Signal recognition particle protein OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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