CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_HELPJ (Cell division protein ftsY homolog OS=Helicobacter pylori J99 GN=ftsY PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 47/148 (31.76%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  222 NKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIA 665
            NK+KGEE   K+    P  ++   L+  D+   ++   ++ + +      LI   + +  L++ VR E       + + L    ++P V L+ G+ G GKTT  AKLA    KQ K  +L AGD +R AA+ QL + GE++ V V  A
Sbjct:   10 NKIKGEEVKEKKRESVPKEELEEILIGFDIQYDLIESLLKHLGD------LITPKQLEVALLRFVRGESYY----DKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNVQVISA 147          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_BUCBP (Cell division protein ftsY homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsY PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  279 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            DI   LL +D+ +   R  V ++    + V     ++    +++I++ ++ K++      L        VIL+ G+ GVGKTT+  KLA   KK+GKS +L AGD +R AAIDQL + GE   V V
Sbjct:  128 DIEEQLLVSDIGVRTTRELVDSL----IKVSTQHELKNLNLIIEILKSKMKKILNKVEGPLNINYKNLFVILVVGVNGVGKTTLIGKLAKNYKKKGKSVILAAGDTFRAAAIDQLKLWGEINSVSV 249          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_DICDI (Signal recognition particle 54 kDa protein OS=Dictyostelium discoideum GN=srp54 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 42/150 (28.00%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 623
            A++  QL+S L +       E T+  E+ +  + +++  AL ++DVS+ ++ +  + + ++     +  G+   + + ++V DEL++L+   V      K +  +++  GLQG GKTT   KLA + KK+G S  +V  D +R  A DQ+
Sbjct:    4 ADLGNQLSSALRSL-----NETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKIKLDQMAAGLNKRKIIKQVVFDELIRLLDPGVPLWKPTKGKSNIVMFVGLQGAGKTTSVTKLAYFYKKKGFSTAIVCADTFRAGAFDQV 148          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_GEOCY (Signal recognition particle 54 kDa protein OS=Geodia cydonium GN=SRP54 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 3
Query:  228 LKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQ----AVSEQAVGVGLIRGVRPDQQLVKI-VRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L  + T+  E +++ M ++I  ALLEADV++ +V +  Q    A+  + +G GL +     +++++  V +EL KL+   V      K    VI+  GLQG GKTT   KLA + +K+G    LV  D +R  A DQL     +  VP Y
Sbjct:   15 LPRQRTVINEEVLQAMLKEICTALLEADVNVKLVGKLRQNVRAAIDFEDMGAGLSK-----RRIIQTSVFNELCKLLDPGVPVWHPTKGHSNVIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFY 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SR541_ARATH (Signal recognition particle 54 kDa protein 1 OS=Arabidopsis thaliana GN=SRP-54A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEP-MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            AE+ G++T  ++   N      T+  E ++   + +I RALL++DVS  +V +    + +      L  G      + + +  EL +++          K++P+V++  GLQG GKTT   K A Y +K+G    LV  D +R  A DQL     +  +P Y
Sbjct:    4 AELGGRITRAIQQMNNV-----TIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_YARLI (Signal recognition particle 54 kDa protein homolog OS=Yarrowia lipolytica GN=SRP54 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 3
Query:  273 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRP-----TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            ++++  ALLE+DV++ +V +  Q V           G    + + K + DELV L+G + S    AK +P      V++  GLQG GKTT   KLA Y +++G    LV  D +R  A DQL     +  +P +
Sbjct:   31 LKEVCSALLESDVNIKLVSQLRQKVKNSVKATP--NGASKKKVIQKALFDELVNLVGVDESAASAAKFKPQKGKSNVVMFVGLQGSGKTTSCTKLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIPFF 162          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 43/159 (27.04%), Postives = 73/159 (45.91%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +  QL   +  A  ++     + ++ + E + +I RALL++DV   +VR     + +      L  G    + + + V  EL  ++          K +P+V++  GLQG GKTT   K A Y +++G    LV  D +R  A DQL     +  +P Y
Sbjct:    2 VLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTTKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_NEIMC (Cell division protein ftsY homolog OS=Neisseria meningitidis serogroup C GN=ftsY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 41/127 (32.28%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  279 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSR-PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            ++   L+ +D+ +      ++ V ++      ++G++   +L   +++ L  L+      LV  +++ P VI+LAG+ G GKTT   KLA Y + QGKS +L AGD +R AA +QL   GE+  V V
Sbjct:  157 ELETVLITSDMDMEATEYLMKDVRDRVS----LKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTV 279          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_NEIMB (Cell division protein ftsY homolog OS=Neisseria meningitidis serogroup B GN=ftsY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 41/127 (32.28%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  279 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSR-PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            ++   L+ +D+ +      ++ V ++      ++G++   +L   +++ L  L+      LV  +++ P VI+LAG+ G GKTT   KLA Y + QGKS +L AGD +R AA +QL   GE+  V V
Sbjct:  157 ELETVLITSDMGMEATEYLMKDVRDRVS----LKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTV 279          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_NEIMA (Cell division protein ftsY homolog OS=Neisseria meningitidis serogroup A GN=ftsY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 41/127 (32.28%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  279 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSR-PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            ++   L+ +D+ +      ++ V ++      ++G++   +L   +++ L  L+      LV  +++ P VI+LAG+ G GKTT   KLA Y + QGKS +L AGD +R AA +QL   GE+  V V
Sbjct:  157 ELETVLITSDMGMEATEYLMKDVRDRVS----LKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTV 279          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FTSY_HELPJ5.313e-1231.76Cell division protein ftsY homolog OS=Helicobacter... [more]
FTSY_BUCBP6.939e-1234.92Cell division protein ftsY homolog OS=Buchnera aph... [more]
SRP54_DICDI9.063e-1228.00Signal recognition particle 54 kDa protein OS=Dict... [more]
SRP54_GEOCY2.637e-1134.00Signal recognition particle 54 kDa protein OS=Geod... [more]
SR541_ARATH2.637e-1128.40Signal recognition particle 54 kDa protein 1 OS=Ar... [more]
SRP54_YARLI5.874e-1132.84Signal recognition particle 54 kDa protein homolog... [more]
SR541_HORVU5.874e-1127.04Signal recognition particle 54 kDa protein 1 OS=Ho... [more]
FTSY_NEIMC5.874e-1132.28Cell division protein ftsY homolog OS=Neisseria me... [more]
FTSY_NEIMB5.874e-1132.28Cell division protein ftsY homolog OS=Neisseria me... [more]
FTSY_NEIMA5.874e-1132.28Cell division protein ftsY homolog OS=Neisseria me... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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