CX295252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_RICTY (Signal recognition particle protein OS=Rickettsia typhi GN=ffh PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.625e-27 Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS--ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 650 MF LT L +++L LT+ I MRD+R ALLE+DV+LPV++ F+ V ++A+G +I+ V P Q ++KI+ +E++ L+ S +L P +L+ GLQG GKTT S KLA LK Q K +LV+ D YRPAA +QL I+ V + Sbjct: 1 MFKTLTQNLTKIFDRLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSESTTKLNLNSKPPVNLLMVGLQGGGKTTASGKLALLLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNI 158
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27 Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+ +G + ++KIV DELVKL+G +L S+ +VILL G+QG GKTT SAKLA Y++K+G L+A D+YRPAA QL L E++ VP++ Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDPSKKSVILLVGIQGSGKTTSSAKLARYIQKKGMKPALIAADIYRPAAYQQLKQLSEKINVPLF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27 Identity = 64/159 (40.25%), Postives = 102/159 (64.15%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G + +L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA QL L E++ VP++ Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27 Identity = 65/159 (40.88%), Postives = 101/159 (63.52%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M +L L A NKLK + K+ + E ++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G +L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA QL L E++ VP++ Sbjct: 1 MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METM5 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26 Identity = 64/159 (40.25%), Postives = 101/159 (63.52%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G +L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA QL L E++ VP++ Sbjct: 1 MLDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26 Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELV L+G +L S+ +VILL G+QG GKTT +AKLA Y++K+G L+A DVYRPAA QL L E++ VP++ Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_BUCBP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ffh PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.103e-25 Identity = 63/160 (39.38%), Postives = 99/160 (61.88%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVY 659 MF LT K+ + LT++NI E +R+IR ALLEADV+LPVV+ F+ ++ + +G + + + P Q+L+KIV+ EL ++G E L + + P +IL+ GLQG GKTT +AKL ++ + K ++V D+YR AAI QL +L +Q + + Sbjct: 1 MFNNLTQRFLKIIKKISNKGRLTEKNIKETLREIRIALLEADVALPVVKNFIPSIQKSVIGNQVNKSLTPGQELIKIVKKELTLILGKENHSLNLSVTPPAIILMIGLQGSGKTTTTAKLGQLIRTKYKKKVIVTSIDIYRLAAIKQLKMLSKQAKISFF 160
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.208e-25 Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYIAG 668 L+ ++ + K TL +ENI E +++IR +LLEADV++ + + V ++A+G + G QQ++KIV +ELV ++G E + L K +P+V+++ GLQG GKTT + KLA L K+ K +L+ G D+YRP AI+QLV LG++ V+ G Sbjct: 7 LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKENAPLDINK-KPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG 164
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24 Identity = 61/159 (38.36%), Postives = 98/159 (61.64%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M +L S + A +K+K + K+ + E ++DI++AL++ADV++ +V + + +A+ +G+ ++KIV DELVKL+G E +L +ILL G+QG GKTT +AKLA L+K+G L+A DVYRPAA QL L E++ +P++ Sbjct: 1 MLDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAIYESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKNKNIILLVGIQGSGKTTSAAKLARTLQKRGFKPALIAADVYRPAAYQQLKQLSEKIHIPLH 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24 Identity = 64/159 (40.25%), Postives = 94/159 (59.12%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M LT A KL +T++NI + +R+IR ALLEADV V + F++ + E+ VG + + + P + ++K V +ELV ++GGE ++L + +L GLQG GKTT K+AN LKK G + + D+ RPAA+ QL L E+VGVP Y Sbjct: 1 MLELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVVGKEVPKNLSPAEFVIKTVYEELVDILGGEKADL-----KKGTVLFVGLQGTGKTTTIGKIANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYY 154 The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bpback to top |