CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_RICTY (Signal recognition particle protein OS=Rickettsia typhi GN=ffh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.625e-27
Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS--ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 650
            MF  LT  L   +++L     LT+  I   MRD+R ALLE+DV+LPV++ F+  V ++A+G  +I+ V P Q ++KI+ +E++ L+    S  +L      P  +L+ GLQG GKTT S KLA  LK Q K  +LV+ D YRPAA +QL I+   V +
Sbjct:    1 MFKTLTQNLTKIFDRLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSESTTKLNLNSKPPVNLLMVGLQGGGKTTASGKLALLLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNI 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M  +L   L  A NK+K    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G    + ++KIV DELVKL+G    +L    S+ +VILL G+QG GKTT SAKLA Y++K+G    L+A D+YRPAA  QL  L E++ VP++
Sbjct:    1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDPSKKSVILLVGIQGSGKTTSSAKLARYIQKKGMKPALIAADIYRPAAYQQLKQLSEKINVPLF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 64/159 (40.25%), Postives = 102/159 (64.15%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M  +L   L  A NK+K    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G+   + +VKIV DELVKL+G  + +L    S+ +VILL G+QG GKTT +AKLA Y++K+G    L+A DVYRPAA  QL  L E++ VP++
Sbjct:    1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27
Identity = 65/159 (40.88%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M  +L   L  A NKLK    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G+   + +VKIV DELVKL+G    +L    S+ +VILL G+QG GKTT +AKLA Y++K+G    L+A DVYRPAA  QL  L E++ VP++
Sbjct:    1 MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METM5 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 64/159 (40.25%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M  +L   L  A NK+K    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G+   + +VKIV DELVKL+G    +L    S+ +VILL G+QG GKTT +AKLA Y++K+G    L+A DVYRPAA  QL  L E++ VP++
Sbjct:    1 MLDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M  +L   L  A NK+K    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G+   + +VKIV DELV L+G    +L    S+ +VILL G+QG GKTT +AKLA Y++K+G    L+A DVYRPAA  QL  L E++ VP++
Sbjct:    1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_BUCBP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ffh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.103e-25
Identity = 63/160 (39.38%), Postives = 99/160 (61.88%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVY 659
            MF  LT        K+  +  LT++NI E +R+IR ALLEADV+LPVV+ F+ ++ +  +G  + + + P Q+L+KIV+ EL  ++G E   L  + + P +IL+ GLQG GKTT +AKL   ++ + K  ++V   D+YR AAI QL +L +Q  +  +
Sbjct:    1 MFNNLTQRFLKIIKKISNKGRLTEKNIKETLREIRIALLEADVALPVVKNFIPSIQKSVIGNQVNKSLTPGQELIKIVKKELTLILGKENHSLNLSVTPPAIILMIGLQGSGKTTTTAKLGQLIRTKYKKKVIVTSIDIYRLAAIKQLKMLSKQAKISFF 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.208e-25
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYIAG 668
            L+  ++ +  K     TL +ENI E +++IR +LLEADV++   +  +  V ++A+G  +  G    QQ++KIV +ELV ++G E + L   K +P+V+++ GLQG GKTT + KLA  L K+ K  +L+ G D+YRP AI+QLV LG++    V+  G
Sbjct:    7 LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKENAPLDINK-KPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG 164          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 61/159 (38.36%), Postives = 98/159 (61.64%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M  +L S +  A +K+K    + K+ + E ++DI++AL++ADV++ +V    + +  +A+     +G+     ++KIV DELVKL+G E  +L        +ILL G+QG GKTT +AKLA  L+K+G    L+A DVYRPAA  QL  L E++ +P++
Sbjct:    1 MLDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAIYESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKNKNIILLVGIQGSGKTTSAAKLARTLQKRGFKPALIAADVYRPAAYQQLKQLSEKIHIPLH 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 64/159 (40.25%), Postives = 94/159 (59.12%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M   LT     A  KL     +T++NI + +R+IR ALLEADV   V + F++ + E+ VG  + + + P + ++K V +ELV ++GGE ++L     +   +L  GLQG GKTT   K+AN LKK G    + + D+ RPAA+ QL  L E+VGVP Y
Sbjct:    1 MLELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVVGKEVPKNLSPAEFVIKTVYEELVDILGGEKADL-----KKGTVLFVGLQGTGKTTTIGKIANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYY 154          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SRP54_RICTY2.625e-2741.77Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_METVS5.847e-2739.62Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM65.847e-2740.25Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METMP7.637e-2740.88Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM51.701e-2640.25Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM74.950e-2639.62Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_BUCBP1.103e-2539.38Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_MYCMY3.208e-2539.62Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_META31.219e-2438.36Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_AQUAE2.716e-2440.25Signal recognition particle protein OS=Aquifex aeo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
back to top