CX295252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_STAMF (Signal recognition 54 kDa protein OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23 Identity = 60/133 (45.11%), Postives = 84/133 (63.16%), Query Frame = 3 Query: 261 IVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + E +RD+++ L++ADV++ +V + + E+A+ G+ + V IV +EL K GG+ + K +P V+LL GLQG GKTT +AKLA Y K +G LVA D YRPAA DQL LGEQ+GVPVY Sbjct: 24 VKEFIRDLQKELIKADVNVKLVLELTKKIRERALKEEPPPGITRREWFVNIVYEELSKFFGGDKKPDIKPKKKPWVMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVAADTYRPAAYDQLKQLGEQIGVPVY 156
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAE (Signal recognition 54 kDa protein OS=Pyrobaculum aerophilum GN=srp54 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.003e-23 Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 180 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 E+FG+L K++G + + + + E R+I+R LL+ADV L +V+ F + ++ G+ P + L+ ++ +ELVKL+GGE +P ++LL G++G GKTT +AKLA YL K+G LV D RPAA DQL L E++GVP Y Sbjct: 6 EIFGKLLE-------KIRGVDYIDEATLQELSREIQRTLLKADVPLDLVKSFTENAVKRIKEEKPPAGIPPREYLIYVLYEELVKLLGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTAAKLAKYLAKRGYKVGLVETDTIRPAAFDQLRQLAEKIGVPFY 158
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23 Identity = 61/159 (38.36%), Postives = 95/159 (59.75%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M G L L KL G + +E + E ++DI+RAL+++DV++ +V +++ E+A+ +G+ P + ++ IV DE+VKL+G + ELV +P IL GLQG GKTT KLA YL+K+G + +V D +RPAA++QL E V +Y Sbjct: 1 MLGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYDEMVKLLGEKSHELVI-DDKPYRILFLGLQGSGKTTTIGKLARYLRKKGFTVGVVCTDTWRPAALEQLKQYTEGQDVSIY 158
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23 Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 3 Query: 225 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPT-VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYI 662 K+KG + ++ + E +RD++RALLEADV + +V + + ++A+ GV L++IV +ELV+L+GGE +E L SR VI+L GL G+GKTT +AKLA YL+++G LV D YRPAA +QL L E+V VPV++ Sbjct: 14 KIKGASIIDEDFVKEVVRDVQRALLEADVDVKLVLELSKRIEKRALEEEPPAGVPKRDYLLRIVYEELVELLGGEKTEGLDIDLSRDVNVIMLVGLYGMGKTTTAAKLARYLQRKGYRVGLVGADPYRPAAGEQLRQLAEEVDVPVHV 161
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRCJ (Signal recognition 54 kDa protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.690e-23 Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 3 Query: 225 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 K++G + + + + E R+I+R+LL+ADV L +V+ F + ++ G+ P + LV ++ +ELVKL+GGE +P V+LL G++G GKTT +AKLA YL K+G LV D RPAA DQL L E++GVP Y Sbjct: 13 KIRGVDYIDEAVLQELSREIQRSLLKADVPLELVKAFTDSAVKRIREEKPPAGIPPREYLVYVLYEELVKLLGGEQPAEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKYLAKRGYKVGLVETDTIRPAAFDQLKQLAEKIGVPFY 157
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THENV (Signal recognition 54 kDa protein OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=srp54 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22 Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = 3 Query: 177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +E+FG+L K++G + + + + R+I+RALL+ADV L +V+ F A ++ G+ P + L+ ++ +ELVKL+GGE +P V+LL G++G GKTT +AKLA L K+G LV D RPAA DQL L E++GVP Y Sbjct: 5 SEVFGKLVE-------KIRGVSYIDEATLQDLSREIQRALLKADVPLDMVKAFTDAAVKRIKEEKPPAGIPPREYLLYVLYEELVKLLGGEQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKLLVKRGYKVGLVETDTVRPAAFDQLRQLAEKIGVPFY 158
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRIL (Signal recognition 54 kDa protein OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22 Identity = 60/145 (41.38%), Postives = 88/145 (60.69%), Query Frame = 3 Query: 225 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 K++G + + + E R+I+RALL+ADV L +V+ F + ++ G+ P + ++ I+ DELVKL+GGE +P ++LL G++G GKTT +AKLA YL K+G LV D RPAA DQL L E++GVP Y Sbjct: 14 KIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKPPAGIPPREYVLYILYDELVKLLGGEQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKRGYRVGLVETDTIRPAAFDQLKQLAEKIGVPFY 158
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22 Identity = 59/159 (37.11%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M L+ L KL G + K+ + + +DI+RAL+++DV++ VV + + ++A+ L +G+ P + +++IV ELV L+G + EL + +P I++ GLQG GKTT +AKL +LKK+G + +V D +RPAA +QL L E + VPV+ Sbjct: 1 MLEGLSESLTQTMKKLAGMSIIDKKTLKDVTKDIQRALIQSDVNVKVVFGLTKKIEKRALEEELPKGLSPKEHVMRIVYQELVNLIGEKPEELKINR-KPYKIMMLGLQGSGKTTTTAKLVKHLKKKGHTSAIVCTDTWRPAAYEQLRQLTEPLDVPVF 158
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METS5 (Signal recognition 54 kDa protein OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22 Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + G+ A K G T + + E ++DI++AL+ +DV + +V + E+ + + +KIV DEL L GG+ V KS P VI+L G+QG GKTT + KLA + KK+G LV DVYRPAA++QL +G+Q+ VPVY Sbjct: 1 MLDGIRDAVRKFLGGNTSYEVAVEEFIKDIQKALISSDVQVKLVFSLTNKIKERLKKETPPSNLERREWFIKIVYDELSALFGGDKEPEVNPKSIPWVIMLVGVQGTGKTTTAGKLAYFYKKRGYKVALVGADVYRPAALEQLQQIGKQINVPVY 155
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.542e-22 Identity = 58/135 (42.96%), Postives = 89/135 (65.93%), Query Frame = 3 Query: 240 ETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQ 641 +T+++ ++ +++IR ALL+ADV+L VV+ F++A+ EQ VG + G + L+K+++ EL+ ++ E+ RP +++ GLQG GKTT KLA +LKKQ + MLVA D+YRPAAIDQL L EQ Sbjct: 21 QTISETDVQAVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKVIKQELINILSQPNQEI--TSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDIYRPAAIDQLATLAEQ 153 The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bpback to top |