CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_STAMF (Signal recognition 54 kDa protein OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 60/133 (45.11%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  261 IVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            + E +RD+++ L++ADV++ +V    + + E+A+      G+   +  V IV +EL K  GG+    +  K +P V+LL GLQG GKTT +AKLA Y K +G    LVA D YRPAA DQL  LGEQ+GVPVY
Sbjct:   24 VKEFIRDLQKELIKADVNVKLVLELTKKIRERALKEEPPPGITRREWFVNIVYEELSKFFGGDKKPDIKPKKKPWVMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVAADTYRPAAYDQLKQLGEQIGVPVY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAE (Signal recognition 54 kDa protein OS=Pyrobaculum aerophilum GN=srp54 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.003e-23
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  180 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            E+FG+L         K++G + + +  + E  R+I+R LL+ADV L +V+ F +   ++        G+ P + L+ ++ +ELVKL+GGE         +P ++LL G++G GKTT +AKLA YL K+G    LV  D  RPAA DQL  L E++GVP Y
Sbjct:    6 EIFGKLLE-------KIRGVDYIDEATLQELSREIQRTLLKADVPLDLVKSFTENAVKRIKEEKPPAGIPPREYLIYVLYEELVKLLGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTAAKLAKYLAKRGYKVGLVETDTIRPAAFDQLRQLAEKIGVPFY 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23
Identity = 61/159 (38.36%), Postives = 95/159 (59.75%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M G L   L     KL G   + +E + E ++DI+RAL+++DV++ +V    +++ E+A+     +G+ P + ++ IV DE+VKL+G +  ELV    +P  IL  GLQG GKTT   KLA YL+K+G +  +V  D +RPAA++QL    E   V +Y
Sbjct:    1 MLGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYDEMVKLLGEKSHELVI-DDKPYRILFLGLQGSGKTTTIGKLARYLRKKGFTVGVVCTDTWRPAALEQLKQYTEGQDVSIY 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 3
Query:  225 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPT-VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYI 662
            K+KG   + ++ + E +RD++RALLEADV + +V    + + ++A+      GV     L++IV +ELV+L+GGE +E L    SR   VI+L GL G+GKTT +AKLA YL+++G    LV  D YRPAA +QL  L E+V VPV++
Sbjct:   14 KIKGASIIDEDFVKEVVRDVQRALLEADVDVKLVLELSKRIEKRALEEEPPAGVPKRDYLLRIVYEELVELLGGEKTEGLDIDLSRDVNVIMLVGLYGMGKTTTAAKLARYLQRKGYRVGLVGADPYRPAAGEQLRQLAEEVDVPVHV 161          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRCJ (Signal recognition 54 kDa protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.690e-23
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 3
Query:  225 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            K++G + + +  + E  R+I+R+LL+ADV L +V+ F  +  ++        G+ P + LV ++ +ELVKL+GGE         +P V+LL G++G GKTT +AKLA YL K+G    LV  D  RPAA DQL  L E++GVP Y
Sbjct:   13 KIRGVDYIDEAVLQELSREIQRSLLKADVPLELVKAFTDSAVKRIREEKPPAGIPPREYLVYVLYEELVKLLGGEQPAEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKYLAKRGYKVGLVETDTIRPAAFDQLKQLAEKIGVPFY 157          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THENV (Signal recognition 54 kDa protein OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=srp54 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +E+FG+L         K++G   + +  + +  R+I+RALL+ADV L +V+ F  A  ++        G+ P + L+ ++ +ELVKL+GGE         +P V+LL G++G GKTT +AKLA  L K+G    LV  D  RPAA DQL  L E++GVP Y
Sbjct:    5 SEVFGKLVE-------KIRGVSYIDEATLQDLSREIQRALLKADVPLDMVKAFTDAAVKRIKEEKPPAGIPPREYLLYVLYEELVKLLGGEQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKLLVKRGYKVGLVETDTVRPAAFDQLRQLAEKIGVPFY 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRIL (Signal recognition 54 kDa protein OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 60/145 (41.38%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  225 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            K++G   + +  + E  R+I+RALL+ADV L +V+ F +   ++        G+ P + ++ I+ DELVKL+GGE         +P ++LL G++G GKTT +AKLA YL K+G    LV  D  RPAA DQL  L E++GVP Y
Sbjct:   14 KIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKPPAGIPPREYVLYILYDELVKLLGGEQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKRGYRVGLVETDTIRPAAFDQLKQLAEKIGVPFY 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 59/159 (37.11%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M   L+  L     KL G   + K+ + +  +DI+RAL+++DV++ VV    + + ++A+   L +G+ P + +++IV  ELV L+G +  EL   + +P  I++ GLQG GKTT +AKL  +LKK+G +  +V  D +RPAA +QL  L E + VPV+
Sbjct:    1 MLEGLSESLTQTMKKLAGMSIIDKKTLKDVTKDIQRALIQSDVNVKVVFGLTKKIEKRALEEELPKGLSPKEHVMRIVYQELVNLIGEKPEELKINR-KPYKIMMLGLQGSGKTTTTAKLVKHLKKKGHTSAIVCTDTWRPAAYEQLRQLTEPLDVPVF 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METS5 (Signal recognition 54 kDa protein OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +  G+  A  K  G  T  +  + E ++DI++AL+ +DV + +V      + E+         +   +  +KIV DEL  L GG+    V  KS P VI+L G+QG GKTT + KLA + KK+G    LV  DVYRPAA++QL  +G+Q+ VPVY
Sbjct:    1 MLDGIRDAVRKFLGGNTSYEVAVEEFIKDIQKALISSDVQVKLVFSLTNKIKERLKKETPPSNLERREWFIKIVYDELSALFGGDKEPEVNPKSIPWVIMLVGVQGTGKTTTAGKLAYFYKKRGYKVALVGADVYRPAALEQLQQIGKQINVPVY 155          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.542e-22
Identity = 58/135 (42.96%), Postives = 89/135 (65.93%), Query Frame = 3
Query:  240 ETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQ 641
            +T+++ ++   +++IR ALL+ADV+L VV+ F++A+ EQ VG  +  G    + L+K+++ EL+ ++     E+     RP  +++ GLQG GKTT   KLA +LKKQ  +  MLVA D+YRPAAIDQL  L EQ
Sbjct:   21 QTISETDVQAVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKVIKQELINILSQPNQEI--TSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDIYRPAAIDQLATLAEQ 153          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SRP54_STAMF1.761e-2345.11Signal recognition 54 kDa protein OS=Staphylotherm... [more]
SRP54_PYRAE3.003e-2338.75Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_METTH3.922e-2338.36Signal recognition 54 kDa protein OS=Methanobacter... [more]
SRP54_METKA3.922e-2343.92Signal recognition 54 kDa protein OS=Methanopyrus ... [more]
SRP54_PYRCJ6.690e-2341.38Signal recognition 54 kDa protein OS=Pyrobaculum c... [more]
SRP54_THENV1.141e-2239.13Signal recognition 54 kDa protein OS=Thermoproteus... [more]
SRP54_PYRIL1.947e-2241.38Signal recognition 54 kDa protein OS=Pyrobaculum i... [more]
SRP54_METST1.947e-2237.11Signal recognition 54 kDa protein OS=Methanosphaer... [more]
SRP54_METS51.947e-2238.71Signal recognition 54 kDa protein OS=Metallosphaer... [more]
SRP54_MYCPN2.542e-2242.96Signal recognition particle protein OS=Mycoplasma ... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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