CX295252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22 Identity = 62/156 (39.74%), Postives = 92/156 (58.97%), Query Frame = 3 Query: 192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +L L +A KL T+ + I E +RDI+RALL+ADV++ +V + + + ++A+ GV + ++KIV +EL K +G E L K +PTVIL G+QG GKTT AKLA YL+K+G +V D +RP A QL L + G+ V+ Sbjct: 5 KLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRALEEEPPAGVSKKEHIIKIVYEELTKFLGTEAKPLEI-KHKPTVILTVGIQGSGKTTSVAKLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22 Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 3 Query: 225 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 K++ E + + + E R+I+R LL+ADV L +V+ F ++ G+ P + L+ ++ +ELVKLMGGE +P ++LL G++G GKTT SAKLA YL K+G +V D RPAA DQL L E++G P Y Sbjct: 14 KIRDVEYIDEATLQEIAREIQRTLLKADVPLDLVKTFTDNAVKRIREEKPPAGIPPREYLIYVLYEELVKLMGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKRGYKVGMVETDTIRPAAFDQLRQLAEKIGAPFY 158
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 9.660e-22 Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + L+ A K G K + + +++++ +L+++DV++ +V Q + ++ + + + IV DEL KL GG+++ V K P VI+L G+QG GKTT + KLA + KK+G LVA DVYRPAA DQLV +G+Q+ VPVY Sbjct: 1 MLDNLKDAVRKFLGSSNYDKA-VNDFIKELQISLIKSDVNVKLVSNLTQKIKDRLEKEKPPTAIERREWFISIVYDELSKLFGGDINPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPAAYDQLVQIGKQINVPVY 154
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21 Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 3 Query: 192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +L L +A KL T+ + I E +RDI+RAL+++DV++ +V + + + E+A+ GV P + ++KIV +EL KL+G E L + +PT++L G+QG GKTT AKLA +L+K+G LV D +RP A QL L E + V+ Sbjct: 5 KLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVIKIVYEELTKLLGKEAVPLEI-REKPTILLTVGIQGSGKTTTIAKLARHLQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNIEVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METS3 (Signal recognition 54 kDa protein OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21 Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 M G L L KL G + K+ I E +++I+RAL+++DV++ +V + + ++A+ +G+ P + ++ I+ +E+V L+GGE L +P IL GLQG GKTT KL YL+K+G + +V D +RPAA +QL L E++ VP+Y Sbjct: 1 MLGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIYEEMVNLLGGEAPGLDI-DVKPYKILFLGLQGSGKTTTIGKLCRYLQKKGFNPAVVCTDTWRPAAYEQLRQLTEEMQVPLY 158
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21 Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +L L A KL T+ + I E +RDI+RAL++ADV++ +V + + ++A+ GV + ++KIV +EL K +G E + K +PTV+L G+QG GKTT AKLA Y +K+G LV D +RP A QL L E G+ V+ Sbjct: 5 KLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRALEEEPPTGVSKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGIQGSGKTTSIAKLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULAC (Signal recognition 54 kDa protein OS=Sulfolobus acidocaldarius GN=srp54 PE=3 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21 Identity = 55/155 (35.48%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + GL A K G K + E +++++ L++ADV++ +V+ + ++ + + + IV DEL +L GG+ V K P +I+L G+QG GKTT S KLA + KK+G LVA D+YRPAA +QL+ +G+Q+ +PVY Sbjct: 1 MLDGLRDAVRKFLGSSDYEKA-VNEFIKELQIILIKADVNVRLVKDLTDRIKKRITEEKPPSAIEKREWFISIVYDELSRLFGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFYKKKGYKVGLVAADIYRPAAYEQLIQIGQQINIPVY 154
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20 Identity = 59/160 (36.88%), Postives = 98/160 (61.25%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 MF L+ G + A NK++ ++ ++ + + ++++ LL+ DV V R ++ V Q G+ + QQ + + L++++ + S FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K +L A D+ R AA++QL +LGEQVGV V+ Sbjct: 1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKAGGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF 153
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.395e-20 Identity = 52/156 (33.33%), Postives = 92/156 (58.97%), Query Frame = 3 Query: 192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +L S L+ A KL G + ++ + E ++DI+RALL+ADV++ +V + + E+A+ + G+ P + ++KIV EL+ ++G +P I++ GLQG GKTT ++KL+ Y +++G ++ D +RP A QL L +++ VP Y Sbjct: 5 KLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERALKEEVPPGMNPREHVIKIVYQELISIVGRSAD----IPLKPQTIMMIGLQGSGKTTTTSKLSRYFQRKGLKPAVICADTFRPGAYQQLKTLCDKLNVPFY 156
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METBF (Signal recognition 54 kDa protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20 Identity = 55/156 (35.26%), Postives = 92/156 (58.97%), Query Frame = 3 Query: 192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +L L+ A KL G + + + E ++DI+RALL+ADV++ +V Q + E+A+ G+ P + +++IV EL++++G + +P +I++ GLQG GKTT +AKLA Y +++G +VA D +RP A QL L E++ V Y Sbjct: 5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEAPPAGMNPREHVIRIVYQELMEIIGKGAE----IQLKPQIIMMVGLQGSGKTTSTAKLARYFQRKGLKAGVVAADTFRPGAYHQLKTLCEKLNVAFY 156 The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bpback to top |