CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 62/156 (39.74%), Postives = 92/156 (58.97%), Query Frame = 3
Query:  192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +L   L +A  KL    T+ +  I E +RDI+RALL+ADV++ +V +  + + ++A+      GV   + ++KIV +EL K +G E   L   K +PTVIL  G+QG GKTT  AKLA YL+K+G    +V  D +RP A  QL  L +  G+ V+
Sbjct:    5 KLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRALEEEPPAGVSKKEHIIKIVYEELTKFLGTEAKPLEI-KHKPTVILTVGIQGSGKTTSVAKLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  225 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            K++  E + +  + E  R+I+R LL+ADV L +V+ F     ++        G+ P + L+ ++ +ELVKLMGGE         +P ++LL G++G GKTT SAKLA YL K+G    +V  D  RPAA DQL  L E++G P Y
Sbjct:   14 KIRDVEYIDEATLQEIAREIQRTLLKADVPLDLVKTFTDNAVKRIREEKPPAGIPPREYLIYVLYEELVKLMGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKRGYKVGMVETDTIRPAAFDQLRQLAEKIGAPFY 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.660e-22
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +   L+ A  K  G     K  + + +++++ +L+++DV++ +V    Q + ++         +   +  + IV DEL KL GG+++  V  K  P VI+L G+QG GKTT + KLA + KK+G    LVA DVYRPAA DQLV +G+Q+ VPVY
Sbjct:    1 MLDNLKDAVRKFLGSSNYDKA-VNDFIKELQISLIKSDVNVKLVSNLTQKIKDRLEKEKPPTAIERREWFISIVYDELSKLFGGDINPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPAAYDQLVQIGKQINVPVY 154          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +L   L +A  KL    T+ +  I E +RDI+RAL+++DV++ +V +  + + E+A+      GV P + ++KIV +EL KL+G E   L   + +PT++L  G+QG GKTT  AKLA +L+K+G    LV  D +RP A  QL  L E   + V+
Sbjct:    5 KLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVIKIVYEELTKLLGKEAVPLEI-REKPTILLTVGIQGSGKTTTIAKLARHLQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNIEVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METS3 (Signal recognition 54 kDa protein OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            M G L   L     KL G   + K+ I E +++I+RAL+++DV++ +V    + + ++A+     +G+ P + ++ I+ +E+V L+GGE   L     +P  IL  GLQG GKTT   KL  YL+K+G +  +V  D +RPAA +QL  L E++ VP+Y
Sbjct:    1 MLGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIYEEMVNLLGGEAPGLDI-DVKPYKILFLGLQGSGKTTTIGKLCRYLQKKGFNPAVVCTDTWRPAAYEQLRQLTEEMQVPLY 158          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +L   L  A  KL    T+ +  I E +RDI+RAL++ADV++ +V    + + ++A+      GV   + ++KIV +EL K +G E   +   K +PTV+L  G+QG GKTT  AKLA Y +K+G    LV  D +RP A  QL  L E  G+ V+
Sbjct:    5 KLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRALEEEPPTGVSKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGIQGSGKTTSIAKLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULAC (Signal recognition 54 kDa protein OS=Sulfolobus acidocaldarius GN=srp54 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 55/155 (35.48%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +  GL  A  K  G     K  + E +++++  L++ADV++ +V+     + ++         +   +  + IV DEL +L GG+    V  K  P +I+L G+QG GKTT S KLA + KK+G    LVA D+YRPAA +QL+ +G+Q+ +PVY
Sbjct:    1 MLDGLRDAVRKFLGSSDYEKA-VNEFIKELQIILIKADVNVRLVKDLTDRIKKRITEEKPPSAIEKREWFISIVYDELSRLFGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFYKKKGYKVGLVAADIYRPAAYEQLIQIGQQINIPVY 154          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 59/160 (36.88%), Postives = 98/160 (61.25%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  L+ G + A NK++ ++   ++ +   + ++++ LL+ DV   V R  ++ V  Q    G+ +     QQ +  +   L++++  + S    FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K  +L A D+ R AA++QL +LGEQVGV V+
Sbjct:    1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKAGGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF 153          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.395e-20
Identity = 52/156 (33.33%), Postives = 92/156 (58.97%), Query Frame = 3
Query:  192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +L S L+ A  KL G   + ++ + E ++DI+RALL+ADV++ +V +    + E+A+   +  G+ P + ++KIV  EL+ ++G           +P  I++ GLQG GKTT ++KL+ Y +++G    ++  D +RP A  QL  L +++ VP Y
Sbjct:    5 KLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERALKEEVPPGMNPREHVIKIVYQELISIVGRSAD----IPLKPQTIMMIGLQGSGKTTTTSKLSRYFQRKGLKPAVICADTFRPGAYQQLKTLCDKLNVPFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METBF (Signal recognition 54 kDa protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 55/156 (35.26%), Postives = 92/156 (58.97%), Query Frame = 3
Query:  192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +L   L+ A  KL G   + +  + E ++DI+RALL+ADV++ +V    Q + E+A+      G+ P + +++IV  EL++++G         + +P +I++ GLQG GKTT +AKLA Y +++G    +VA D +RP A  QL  L E++ V  Y
Sbjct:    5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEAPPAGMNPREHVIRIVYQELMEIIGKGAE----IQLKPQIIMMVGLQGSGKTTSTAKLARYFQRKGLKAGVVAADTFRPGAYHQLKTLCEKLNVAFY 156          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SRP54_PYRKO5.663e-2239.74Signal recognition 54 kDa protein OS=Pyrococcus ko... [more]
SRP54_PYRAR5.663e-2240.00Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_SULTO9.660e-2237.42Signal recognition 54 kDa protein OS=Sulfolobus to... [more]
SRP54_THEGJ1.262e-2138.46Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_METS31.262e-2136.48Signal recognition 54 kDa protein OS=Methanobrevib... [more]
SRP54_THEON1.648e-2138.46Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_SULAC6.262e-2135.48Signal recognition 54 kDa protein OS=Sulfolobus ac... [more]
SRP54_HELPJ1.068e-2036.88Signal recognition particle protein OS=Helicobacte... [more]
SRP54_METBU1.395e-2033.33Signal recognition 54 kDa protein OS=Methanococcoi... [more]
SRP54_METBF1.822e-2035.26Signal recognition 54 kDa protein OS=Methanosarcin... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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