CX295252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20 Identity = 59/159 (37.11%), Postives = 96/159 (60.38%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668 L+S + K +T+T++++ +++IR ALL+ADV+L VV+ F++A+ ++ VG + G + L+K ++ EL+ ++ EL + RP I++ GLQG GKTT KLA +L+K+ K MLV D+YRPAAI+QL L +Q + G Sbjct: 6 LSSIVMRTMQKKINAQTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKTELINILSQPNQEL--NEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQLETLSQQTNSVFFAQG 162
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ARCFU (Signal recognition 54 kDa protein OS=Archaeoglobus fulgidus GN=srp54 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20 Identity = 54/151 (35.76%), Postives = 95/151 (62.91%), Query Frame = 3 Query: 207 LEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 L+ K+ G ++ K+ + E +++I+RAL++ADV++ V+ A+ ++A+ ++ + +Q++KIV +EL++ +G E E+ K++ I+L GLQG GKTT +AK+A Y K +G +VA D +RPAA +QL L E+ G+ Y Sbjct: 6 LKEVARKIAGSSSIDKKFVEEMVKEIQRALIKADVNVRQVKEISDAIKKRALSEDVLPALNAKEQILKIVYEELLRGVG-EGLEIPLKKAK---IMLVGLQGSGKTTTTAKMAKYFKDRGMKVAVVAADTWRPAAYEQLRQLAEEYGITFY 152
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ACIAM (Signal recognition 54 kDa protein (Fragment) OS=Acidianus ambivalens GN=srp54 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20 Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 273 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +++++++L+ ADV++ +V + E+ + + +KIV DEL L GG+ V P VI+L G+QG GKTT + KLA + KK+G LV DVYRPAA++QL LG+Q+GVPVY Sbjct: 29 IKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY 157
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METMA (Signal recognition 54 kDa protein OS=Methanosarcina mazei GN=srp54 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20 Identity = 55/156 (35.26%), Postives = 91/156 (58.33%), Query Frame = 3 Query: 192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +L L+ A KL G + + + E ++DI+RALL+ADV++ +V Q + E+A+ G+ P + +++IV EL++++G + +P I++ GLQG GKTT +AKLA Y +++G +VA D +RP A QL L E++ V Y Sbjct: 5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEDPPAGMNPREHVIRIVYQELMEIIGKGAD----IQLKPQTIMMVGLQGSGKTTSAAKLARYFQRKGLKAGVVAADTFRPGAYHQLKTLSEKLNVGFY 156
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20 Identity = 59/160 (36.88%), Postives = 98/160 (61.25%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 MF L+ G + A NK++ ++ ++ + + ++++ LL+ DV V R ++ V Q G+ + QQ + + L++++ + S FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K +L A D+ R AA++QL +LGEQVGV V+ Sbjct: 1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF 153
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METAC (Signal recognition 54 kDa protein OS=Methanosarcina acetivorans GN=srp54 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20 Identity = 55/156 (35.26%), Postives = 91/156 (58.33%), Query Frame = 3 Query: 192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +L L+ A KL G + + + E ++DI+RALL+ADV++ +V Q + E+A+ G+ P + +++IV EL++++G + +P I++ GLQG GKTT +AKLA Y +++G +VA D +RP A QL L E++ V Y Sbjct: 5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEEPPAGMNPREHVIRIVYQELMEIIGKGAE----IQLKPQTIMMVGLQGSGKTTSAAKLARYFQRKGLKAGVVAADTFRPGAYHQLKTLAEKLNVGFY 156
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIM (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=srp54 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20 Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + + A K T ++ + E +++++++L+ +DV++ +V + E+ + + + IV DEL KL GG+ V P +I+L G+QG GKTT S KLA + K++G LVA DVYRPAA DQL+ LG Q+GVPVY Sbjct: 1 MLENIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIK (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=srp54 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20 Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + + A K T ++ + E +++++++L+ +DV++ +V + E+ + + + IV DEL KL GG+ V P +I+L G+QG GKTT S KLA + K++G LVA DVYRPAA DQL+ LG Q+GVPVY Sbjct: 1 MLENIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIA (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.16.27) GN=srp54 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20 Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + + A K T ++ + E +++++++L+ +DV++ +V + E+ + + + IV DEL KL GG+ V P +I+L G+QG GKTT S KLA + K++G LVA DVYRPAA DQL+ LG Q+GVPVY Sbjct: 1 MLENIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIN (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=srp54 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19 Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + + A K T ++ + E +++++++L+ +DV++ +V + E+ + + + IV DEL KL GG+ V P +I+L G+QG GKTT + KLA + K++G LVA DVYRPAA DQL+ LG Q+GVPVY Sbjct: 1 MLENIRDAVRKFLTRSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155 The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bpback to top |