CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 59/159 (37.11%), Postives = 96/159 (60.38%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668
            L+S +     K    +T+T++++   +++IR ALL+ADV+L VV+ F++A+ ++ VG  +  G    + L+K ++ EL+ ++     EL   + RP  I++ GLQG GKTT   KLA +L+K+ K   MLV  D+YRPAAI+QL  L +Q     +  G
Sbjct:    6 LSSIVMRTMQKKINAQTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKTELINILSQPNQEL--NEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQLETLSQQTNSVFFAQG 162          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ARCFU (Signal recognition 54 kDa protein OS=Archaeoglobus fulgidus GN=srp54 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 54/151 (35.76%), Postives = 95/151 (62.91%), Query Frame = 3
Query:  207 LEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L+    K+ G  ++ K+ + E +++I+RAL++ADV++  V+    A+ ++A+   ++  +   +Q++KIV +EL++ +G E  E+   K++   I+L GLQG GKTT +AK+A Y K +G    +VA D +RPAA +QL  L E+ G+  Y
Sbjct:    6 LKEVARKIAGSSSIDKKFVEEMVKEIQRALIKADVNVRQVKEISDAIKKRALSEDVLPALNAKEQILKIVYEELLRGVG-EGLEIPLKKAK---IMLVGLQGSGKTTTTAKMAKYFKDRGMKVAVVAADTWRPAAYEQLRQLAEEYGITFY 152          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ACIAM (Signal recognition 54 kDa protein (Fragment) OS=Acidianus ambivalens GN=srp54 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 3
Query:  273 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +++++++L+ ADV++ +V      + E+         +   +  +KIV DEL  L GG+    V     P VI+L G+QG GKTT + KLA + KK+G    LV  DVYRPAA++QL  LG+Q+GVPVY
Sbjct:   29 IKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY 157          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METMA (Signal recognition 54 kDa protein OS=Methanosarcina mazei GN=srp54 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20
Identity = 55/156 (35.26%), Postives = 91/156 (58.33%), Query Frame = 3
Query:  192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +L   L+ A  KL G   + +  + E ++DI+RALL+ADV++ +V    Q + E+A+      G+ P + +++IV  EL++++G         + +P  I++ GLQG GKTT +AKLA Y +++G    +VA D +RP A  QL  L E++ V  Y
Sbjct:    5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEDPPAGMNPREHVIRIVYQELMEIIGKGAD----IQLKPQTIMMVGLQGSGKTTSAAKLARYFQRKGLKAGVVAADTFRPGAYHQLKTLSEKLNVGFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20
Identity = 59/160 (36.88%), Postives = 98/160 (61.25%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  L+ G + A NK++ ++   ++ +   + ++++ LL+ DV   V R  ++ V  Q    G+ +     QQ +  +   L++++  + S    FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K  +L A D+ R AA++QL +LGEQVGV V+
Sbjct:    1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF 153          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METAC (Signal recognition 54 kDa protein OS=Methanosarcina acetivorans GN=srp54 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 55/156 (35.26%), Postives = 91/156 (58.33%), Query Frame = 3
Query:  192 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +L   L+ A  KL G   + +  + E ++DI+RALL+ADV++ +V    Q + E+A+      G+ P + +++IV  EL++++G         + +P  I++ GLQG GKTT +AKLA Y +++G    +VA D +RP A  QL  L E++ V  Y
Sbjct:    5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEEPPAGMNPREHVIRIVYQELMEIIGKGAE----IQLKPQTIMMVGLQGSGKTTSAAKLARYFQRKGLKAGVVAADTFRPGAYHQLKTLAEKLNVGFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIM (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +   +  A  K     T  ++ + E +++++++L+ +DV++ +V      + E+         +   +  + IV DEL KL GG+    V     P +I+L G+QG GKTT S KLA + K++G    LVA DVYRPAA DQL+ LG Q+GVPVY
Sbjct:    1 MLENIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIK (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +   +  A  K     T  ++ + E +++++++L+ +DV++ +V      + E+         +   +  + IV DEL KL GG+    V     P +I+L G+QG GKTT S KLA + K++G    LVA DVYRPAA DQL+ LG Q+GVPVY
Sbjct:    1 MLENIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIA (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.16.27) GN=srp54 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +   +  A  K     T  ++ + E +++++++L+ +DV++ +V      + E+         +   +  + IV DEL KL GG+    V     P +I+L G+QG GKTT S KLA + K++G    LVA DVYRPAA DQL+ LG Q+GVPVY
Sbjct:    1 MLENIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIN (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=srp54 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +   +  A  K     T  ++ + E +++++++L+ +DV++ +V      + E+         +   +  + IV DEL KL GG+    V     P +I+L G+QG GKTT + KLA + K++G    LVA DVYRPAA DQL+ LG Q+GVPVY
Sbjct:    1 MLENIRDAVRKFLTRSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SRP54_MYCGE2.379e-2037.11Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_ARCFU2.379e-2035.76Signal recognition 54 kDa protein OS=Archaeoglobus... [more]
SRP54_ACIAM2.379e-2040.31Signal recognition 54 kDa protein (Fragment) OS=Ac... [more]
SRP54_METMA3.108e-2035.26Signal recognition 54 kDa protein OS=Methanosarcin... [more]
SRP54_HELPY3.108e-2036.88Signal recognition particle protein OS=Helicobacte... [more]
SRP54_METAC4.059e-2035.26Signal recognition 54 kDa protein OS=Methanosarcin... [more]
SRP54_SULIM9.042e-2036.13Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULIK9.042e-2036.13Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULIA9.042e-2036.13Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULIN1.181e-1935.48Signal recognition 54 kDa protein OS=Sulfolobus is... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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