CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIY (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +   +  A  K     T  ++ + E +++++++L+ +DV++ +V      + E+         +   +  + IV DEL KL GG+    V     P +I+L G+QG GKTT + KLA + K++G    LVA DVYRPAA DQL+ LG Q+GVPVY
Sbjct:    1 MLENIRDAVRKFLTGSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULSO (Signal recognition 54 kDa protein OS=Sulfolobus solfataricus GN=srp54 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +   +  A  K     T  ++ + E ++D++++L+ +DV++ +V      + E+         +   +  + IV DEL KL GG+    V     P +I+L G+QG GKTT + KLA + KK+G    LVA DVYRPAA DQL+ LG Q+GV VY
Sbjct:    1 MLENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 155          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIL (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +   +  A  K     T  ++ + E +++++++L+ +DV++ +V      + E+         +   +  + IV DEL KL GG+    V     P +I+L G+QG GKTT + KLA + K++G    LVA DVYRPAA DQL+ LG Q+GVPVY
Sbjct:    1 MLENIRDAVRKFLTGSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTRLPFIIMLVGVQGSGKTTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METLZ (Signal recognition 54 kDa protein OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 52/155 (33.55%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L++ L+ A  KL G+  + +  + E +RD++RALL +DV++ +V    + +  +++   L +G+   + +++IV  ELV L+G E    +    +P  IL+AGLQG GKTT + KL  Y +++G     +  D +RP A  QL  L +++ VP Y
Sbjct:    6 LSNSLKDAMKKLAGKTVIDRAAVDELVRDLQRALLSSDVNVKLVMELSKQIKARSLDEDLPKGINAREHVLRIVYQELVNLVGKEAEFSL----KPQKILMAGLQGSGKTTTTGKLCRYFQRKGLKVGAIGADNFRPGAYAQLETLCKKINVPSY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HYPBU (Signal recognition 54 kDa protein OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  255 ENIV-EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            ENIV E +RD++RAL+ ADV++ +V    + + E+A+      G+   + LVK+  DELVKL GGE    V     P VI++ G+QG GKTT   KLA + +  G    +VA D YRP A +QL  L ++ G   Y
Sbjct:   22 ENIVNEFIRDLQRALISADVNVRLVFNLTKRIRERALKEQPPPGLSRREWLVKLTYDELVKLFGGEYEPEVKPPYTPYVIMMVGVQGSGKTTTVGKLAKFYRGMGYRVGVVAADTYRPGAYEQLKQLADRAGAMFY 157          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRHO (Signal recognition 54 kDa protein OS=Pyrococcus horikoshii GN=srp54 PE=3 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18
Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L   L  A  K+    ++ +  + E +RDI+RALL+ADV++ +V +  + +  +A+      G+   + ++KIV +EL K +G E   +   K +PTV+L  G+QG GKTT  AKLA Y +K+G    +V  D +RP A  QL  L +   + V+
Sbjct:    6 LGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRFU (Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 52/155 (33.55%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L   L     K+    ++ +  I E +RDI+RAL++ADV++ +V +  + +  +A+      G+   + ++KIV +EL K +G E   +   K +PT++L+ G+QG GKTT  AKLA Y +K+G    +V  D +RP A  QL  L ++  + V+
Sbjct:    6 LGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 51/155 (32.90%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L   L  A  K+    ++ +  + E +RDI+RAL++ADV++ +V +  + +  +A+      G+   + ++KIV +EL K +G E   +   K +PT++L+ G+QG GKTT  AKLA + +K+G    +V  D +RP A  QL  L +   + V+
Sbjct:    6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_AERPE (Signal recognition 54 kDa protein OS=Aeropyrum pernix GN=srp54 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.480e-18
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  273 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            ++D++R L++ADV++ +V    + + E+A+      GV     ++KIV +ELVKL GG+    V     P ++LL G+QG GKTT + KLA Y  ++G    LV+ D +RP A +QL  L E+ G   Y
Sbjct:   27 VKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIKIVYEELVKLFGGDQEPQVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRRGYKVGLVSSDTHRPGAYEQLKRLAEEAGAMFY 155          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: Y291_METJA (Probable signal recognition particle protein MJ0291 OS=Methanocaldococcus jannaschii GN=MJ0291 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 60/162 (37.04%), Postives = 94/162 (58.02%), Query Frame = 3
Query:  204 GLEAAWNK-LKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKI----VRDELVKLMGGE---VSELVF---AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            GL  A  K LK E  + +E+I + + ++  ALLEADV+L VV + ++ +  + VG    R + PD  + +I    V++ +  ++  E   + E++    A+ +PTVI+  G+ G GKTT  AKLA  LK++G S +L AGD +R  AI+QL    + VGV V
Sbjct:  103 GLTRAIKKVLKKEVVILEEDIEDVLEELEIALLEADVALEVVEKLIENIKNELVG----RKISPDDNVEEITINAVKNAIKNILSQEKIDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVGVKV 260          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SRP54_SULIY2.014e-1935.48Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULSO2.631e-1936.13Signal recognition 54 kDa protein OS=Sulfolobus so... [more]
SRP54_SULIL2.631e-1935.48Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_METLZ4.487e-1933.55Signal recognition 54 kDa protein OS=Methanocorpus... [more]
SRP54_HYPBU1.306e-1841.18Signal recognition 54 kDa protein OS=Hyperthermus ... [more]
SRP54_PYRHO1.705e-1834.84Signal recognition 54 kDa protein OS=Pyrococcus ho... [more]
SRP54_PYRFU2.227e-1833.55Signal recognition 54 kDa protein OS=Pyrococcus fu... [more]
SRP54_PYRAB4.961e-1832.90Signal recognition 54 kDa protein OS=Pyrococcus ab... [more]
SRP54_AERPE6.480e-1837.98Signal recognition 54 kDa protein OS=Aeropyrum per... [more]
Y291_METJA8.463e-1837.04Probable signal recognition particle protein MJ029... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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