CX295252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIY (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=srp54 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19 Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + + A K T ++ + E +++++++L+ +DV++ +V + E+ + + + IV DEL KL GG+ V P +I+L G+QG GKTT + KLA + K++G LVA DVYRPAA DQL+ LG Q+GVPVY Sbjct: 1 MLENIRDAVRKFLTGSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULSO (Signal recognition 54 kDa protein OS=Sulfolobus solfataricus GN=srp54 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19 Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + + A K T ++ + E ++D++++L+ +DV++ +V + E+ + + + IV DEL KL GG+ V P +I+L G+QG GKTT + KLA + KK+G LVA DVYRPAA DQL+ LG Q+GV VY Sbjct: 1 MLENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 155
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SULIL (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=srp54 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19 Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 + + A K T ++ + E +++++++L+ +DV++ +V + E+ + + + IV DEL KL GG+ V P +I+L G+QG GKTT + KLA + K++G LVA DVYRPAA DQL+ LG Q+GVPVY Sbjct: 1 MLENIRDAVRKFLTGSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTRLPFIIMLVGVQGSGKTTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVY 155
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METLZ (Signal recognition 54 kDa protein OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19 Identity = 52/155 (33.55%), Postives = 90/155 (58.06%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 L++ L+ A KL G+ + + + E +RD++RALL +DV++ +V + + +++ L +G+ + +++IV ELV L+G E + +P IL+AGLQG GKTT + KL Y +++G + D +RP A QL L +++ VP Y Sbjct: 6 LSNSLKDAMKKLAGKTVIDRAAVDELVRDLQRALLSSDVNVKLVMELSKQIKARSLDEDLPKGINAREHVLRIVYQELVNLVGKEAEFSL----KPQKILMAGLQGSGKTTTTGKLCRYFQRKGLKVGAIGADNFRPGAYAQLETLCKKINVPSY 156
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HYPBU (Signal recognition 54 kDa protein OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18 Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 3 Query: 255 ENIV-EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 ENIV E +RD++RAL+ ADV++ +V + + E+A+ G+ + LVK+ DELVKL GGE V P VI++ G+QG GKTT KLA + + G +VA D YRP A +QL L ++ G Y Sbjct: 22 ENIVNEFIRDLQRALISADVNVRLVFNLTKRIRERALKEQPPPGLSRREWLVKLTYDELVKLFGGEYEPEVKPPYTPYVIMMVGVQGSGKTTTVGKLAKFYRGMGYRVGVVAADTYRPGAYEQLKQLADRAGAMFY 157
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRHO (Signal recognition 54 kDa protein OS=Pyrococcus horikoshii GN=srp54 PE=3 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18 Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 L L A K+ ++ + + E +RDI+RALL+ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E + K +PTV+L G+QG GKTT AKLA Y +K+G +V D +RP A QL L + + V+ Sbjct: 6 LGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRFU (Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18 Identity = 52/155 (33.55%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 L L K+ ++ + I E +RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E + K +PT++L+ G+QG GKTT AKLA Y +K+G +V D +RP A QL L ++ + V+ Sbjct: 6 LGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18 Identity = 51/155 (32.90%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 L L A K+ ++ + + E +RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E + K +PT++L+ G+QG GKTT AKLA + +K+G +V D +RP A QL L + + V+ Sbjct: 6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_AERPE (Signal recognition 54 kDa protein OS=Aeropyrum pernix GN=srp54 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.480e-18 Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 3 Query: 273 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 ++D++R L++ADV++ +V + + E+A+ GV ++KIV +ELVKL GG+ V P ++LL G+QG GKTT + KLA Y ++G LV+ D +RP A +QL L E+ G Y Sbjct: 27 VKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIKIVYEELVKLFGGDQEPQVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRRGYKVGLVSSDTHRPGAYEQLKRLAEEAGAMFY 155
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: Y291_METJA (Probable signal recognition particle protein MJ0291 OS=Methanocaldococcus jannaschii GN=MJ0291 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18 Identity = 60/162 (37.04%), Postives = 94/162 (58.02%), Query Frame = 3 Query: 204 GLEAAWNK-LKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKI----VRDELVKLMGGE---VSELVF---AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656 GL A K LK E + +E+I + + ++ ALLEADV+L VV + ++ + + VG R + PD + +I V++ + ++ E + E++ A+ +PTVI+ G+ G GKTT AKLA LK++G S +L AGD +R AI+QL + VGV V Sbjct: 103 GLTRAIKKVLKKEVVILEEDIEDVLEELEIALLEADVALEVVEKLIENIKNELVG----RKISPDDNVEEITINAVKNAIKNILSQEKIDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVGVKV 260 The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bpback to top |