CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_UNCMA (Signal recognition 54 kDa protein OS=Uncultured methanogenic archaeon RC-I GN=srp54 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 51/155 (32.90%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L + L+ A  K+     + KE I E ++DI+RA+++ADV++ +V +    +  +A+      G+   + +++IV  ELV ++G      + +++    I++ GLQG GKTT SAK+A Y  ++G    ++  D YRP A DQL  L +++GV  Y
Sbjct:    6 LGTSLKDALRKIANSGKIDKEVIDEVVKDIQRAMIQADVNVKLVMKLSSTIKNRALTEAPPAGMNSKEHVLRIVYTELVNIVGKATPVALQSQT----IMMVGLQGSGKTTTSAKIARYFARKGLKPAVICADTYRPGAYDQLKQLCDKLGVGFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THEAC (Signal recognition 54 kDa protein OS=Thermoplasma acidophilum GN=srp54 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 51/154 (33.12%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  198 TSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            ++ L     K+ G   + KE + E  +D++R LL+ADV++  V +  + +  +A+      G+     +V+I+ +EL+K++G    E    K +P  I+L GL G GKTT + KLA +  K+G +  L+A DV+R AA DQL  +  +V    Y
Sbjct:    7 SASLRETIRKITGSSYIDKETVKEISKDLQRILLKADVNVKTVLQVTKEMERRALEEKPPAGMAHQDYMVRIIYEELLKILG----EPSNVKLKPQTIMLVGLYGNGKTTTAGKLARFFAKKGLNSGLIAADVHRYAAYDQLKQIASEVNAKFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_NATPD (Signal recognition 54 kDa protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=srp54 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 53/155 (34.19%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L S L    +KL+G+ TL+++++ E +++I+R+LL ADV + +V     ++ E+A+      G      ++KIV +E+V+L+G    E          I+LAGLQG GKTT +AK+A +  K+G    ++  D +RP A DQ   + E+  V  Y
Sbjct:    6 LGSSLRGTLDKLQGKTTLSEDDVEEIVKEIQRSLLSADVDVDLVMDLSDSIRERALDEEPPAGTTARDHVLKIVYEEMVELVG----ESTALPLEEQTIVLAGLQGSGKTTTAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKEMCERAEVDFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_METTP (Signal recognition 54 kDa protein OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 52/155 (33.55%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L   L  A  K+     + K  + + +RDI+RALL+ADV++ +V      + E+A+      G+ P + ++ IV  EL+ L+G   +++   K     I+L GLQG GKTT +AKLA Y +++G    ++  D +R  A DQL  L ++ G+  Y
Sbjct:    6 LGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERALNEKPPAGMNPREHVINIVYQELINLIG-RGTDIPLKKQ---TIMLVGLQGSGKTTTAAKLATYFQRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_THEVO (Signal recognition 54 kDa protein OS=Thermoplasma volcanium GN=srp54 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.222e-16
Identity = 52/155 (33.55%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L+S L     K+ G   + K  + E  +D++R LL+ADV++  V    + +  +A+      G+     +VKI+ +EL+K++G    E    + +P  I+L GL G GKTT + KL+ +  K+G S  L+A DV+R AA +QL  + E V    Y
Sbjct:    6 LSSSLRETIRKITGSTYIDKNTVKEISKDLQRILLKADVNVQTVLNITKEMERRALEEKPPVGMAHQDYMVKIIYEELLKILG----EPSNVELKPQTIMLVGLYGHGKTTSAGKLSRFFMKKGLSAGLIAADVHRYAAYEQLQQIAESVNAKFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HALVO (Signal recognition 54 kDa protein OS=Halobacterium volcanii GN=srp54 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16
Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L S L  + +KL+G+  L ++++ E +++I+R+LL ADV + +V     ++  +A+      G      ++KIV +ELV L+G E +E+         I+LAGLQG GKTT SAK+A +  K+G    ++  D +RP A DQ   + E+  V  Y
Sbjct:    6 LGSSLRGSLDKLRGKSRLDEDDVQEIVKEIQRSLLSADVDVSLVMDLSDSIKTRALEEEPPGGTSARDHVLKIVYEELVDLIG-ESTEIPLESQ---TIMLAGLQGSGKTTTSAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HALWD (Signal recognition 54 kDa protein OS=Haloquadratum walsbyi (strain DSM 16790) GN=srp54 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L S L  + +KL+G+  L ++++ E +++I+R+LL ADV + +V     ++ ++A G     G      +++IV +ELV L+G           +   ILLAGLQG GKTT +AK+A +   +G    ++  D +RP A DQ   + E+  V  Y
Sbjct:    6 LGSSLRGSLDKLQGKSRLDEDDVEEIVKEIQRSLLSADVEVSLVMELSSSIEDRATGEEPPAGTSARDHVLRIVYEELVDLVGDSTD----LPLKSQTILLAGLQGSGKTTSAAKMAWWFSTKGLRPAVIQTDTFRPGAYDQAEQMCERAEVSFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_BACSU (Cell division protein ftsY homolog OS=Bacillus subtilis GN=ftsY PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 45/129 (34.88%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  279 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGG---EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            ++   L+ ADV    V   +  + ++       R ++  +++  ++ ++LV++      ++SEL     R  VILL G+ GVGKTT   KLA+ +K++GKS +L AGD +R  AI+QL + GE+ GVPV
Sbjct:   54 ELEEVLISADVGFTTVMELIDELKKEVKR----RNIQDPKEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPV 178          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HALLT (Signal recognition 54 kDa protein OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=srp54 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 52/155 (33.55%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L + L ++ +KL+G+  L++ ++ E +++I+R+LL ADV + +V     ++  +A+      G      ++KIV +E+V+L+G + +EL         ILLAGLQG GKTT +AK+A +  K+G    ++  D +RP A DQ   + E+  V  Y
Sbjct:    6 LGTSLRSSLDKLQGKSRLSESDVEEIVKEIQRSLLSADVDVSLVMELSDSIKTRALEEEPPGGTTAKDHVLKIVYEEMVELVG-DSTELPLENQ---TILLAGLQGSGKTTSAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HALMA (Signal recognition 54 kDa protein OS=Haloarcula marismortui GN=srp54 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 52/155 (33.55%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L S L    + L+G+  L++E+I + +++I+R+LL+ADV + +V+    ++  +A+      G  P   +++IV +ELV L+ GE +EL   +     I+LAGL G GKTT +AK+A +   +G    ++  D  RP A DQ   + E+  V  Y
Sbjct:    6 LGSSLRGTLDDLRGKSRLSEEDIEDIVKEIQRSLLQADVDVGLVQDLSNSIETRALDEEPPAGTTPRDWVLRIVYEELVDLV-GESTELPLEEQ---TIMLAGLYGSGKTTTAAKMAWWFSTKGLRPAIIQTDTDRPGAYDQSKEMAERAEVDFY 156          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SRP54_UNCMA8.463e-1832.90Signal recognition 54 kDa protein OS=Uncultured me... [more]
SRP54_THEAC4.200e-1733.12Signal recognition 54 kDa protein OS=Thermoplasma ... [more]
SRP54_NATPD5.485e-1734.19Signal recognition 54 kDa protein OS=Natronomonas ... [more]
SRP54_METTP5.485e-1733.55Signal recognition 54 kDa protein OS=Methanosaeta ... [more]
SRP54_THEVO1.222e-1633.55Signal recognition 54 kDa protein OS=Thermoplasma ... [more]
SRP54_HALVO2.722e-1634.84Signal recognition 54 kDa protein OS=Halobacterium... [more]
SRP54_HALWD4.644e-1632.90Signal recognition 54 kDa protein OS=Haloquadratum... [more]
FTSY_BACSU4.644e-1634.88Cell division protein ftsY homolog OS=Bacillus sub... [more]
SRP54_HALLT7.921e-1633.55Signal recognition 54 kDa protein OS=Halorubrum la... [more]
SRP54_HALMA5.134e-1533.55Signal recognition 54 kDa protein OS=Haloarcula ma... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
back to top