CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HALSA (Signal recognition 54 kDa protein OS=Halobacterium salinarium GN=srp54 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 47/155 (30.32%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L S L    + L+G+  +++E++ + +++I+R+LL+ADV + +V    ++++E+++      G      +++IV +ELV L+G               I+LAGLQG GKTT +AK+A +  K+G    +V  D +RP A +Q   + ++  V  Y
Sbjct:    6 LGSSLRGTLDTLRGKSRISEEDVDKVVKEIQRSLLQADVDVDLVMDLSESITERSLEEEPPGGTSARDHVLRIVYEELVGLVGDSTP----IPLEEQTIMLAGLQGSGKTTTAAKMAWWFSKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HALS3 (Signal recognition 54 kDa protein OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 47/155 (30.32%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            L S L    + L+G+  +++E++ + +++I+R+LL+ADV + +V    ++++E+++      G      +++IV +ELV L+G               I+LAGLQG GKTT +AK+A +  K+G    +V  D +RP A +Q   + ++  V  Y
Sbjct:    6 LGSSLRGTLDTLRGKSRISEEDVDKVVKEIQRSLLQADVDVDLVMDLSESITERSLEEEPPGGTSARDHVLRIVYEELVGLVGDSTP----IPLEEQTIMLAGLQGSGKTTTAAKMAWWFSKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFY 156          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SCHPO (Signal recognition particle 54 kDa protein homolog OS=Schizosaccharomyces pombe GN=srp54 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +F  L   L +A        ++ +E +   +++I  ALLE DV++ +V+     + ++     L +G+   + + K V DEL  L+  +V      K RP+VI++ GLQG GKTT  +KLA + +++G    LVA D +R  A DQL     +  VP +
Sbjct:    2 VFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYF 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_ECOLI (Cell division protein ftsY OS=Escherichia coli (strain K12) GN=ftsY PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 43/126 (34.13%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  279 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            ++   LL ADV +   R+ +  ++E A      + +R  + L  ++++E+ +++      L      P VIL+ G+ GVGKTT   KLA   ++QGKS ML AGD +R AA++QL + G++  +PV
Sbjct:  230 ELEEQLLIADVGVETTRKIITNLTEGASR----KQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV 351          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PONAB (Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            A++  ++TS L +  N      T+  E ++  M +++  ALLEADV++ +V++  + V        +  G+   + +   V  ELVKL+   V      K +  VI+  GLQG GKTT  +KLA Y +++G    L+  D +R  A DQL     +  +P Y
Sbjct:    4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MOUSE (Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            A++  ++TS L +  N      T+  E ++  M +++  ALLEADV++ +V++  + V        +  G+   + +   V  ELVKL+   V      K +  VI+  GLQG GKTT  +KLA Y +++G    L+  D +R  A DQL     +  +P Y
Sbjct:    4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MACFA (Signal recognition particle 54 kDa protein OS=Macaca fascicularis GN=SRP54 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            A++  ++TS L +  N      T+  E ++  M +++  ALLEADV++ +V++  + V        +  G+   + +   V  ELVKL+   V      K +  VI+  GLQG GKTT  +KLA Y +++G    L+  D +R  A DQL     +  +P Y
Sbjct:    4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HUMAN (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            A++  ++TS L +  N      T+  E ++  M +++  ALLEADV++ +V++  + V        +  G+   + +   V  ELVKL+   V      K +  VI+  GLQG GKTT  +KLA Y +++G    L+  D +R  A DQL     +  +P Y
Sbjct:    4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_CANFA (Signal recognition particle 54 kDa protein OS=Canis familiaris GN=SRP54 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            A++  ++TS L +  N      T+  E ++  M +++  ALLEADV++ +V++  + V        +  G+   + +   V  ELVKL+   V      K +  VI+  GLQG GKTT  +KLA Y +++G    L+  D +R  A DQL     +  +P Y
Sbjct:    4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_BOVIN (Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            A++  ++TS L +  N      T+  E ++  M +++  ALLEADV++ +V++  + V        +  G+   + +   V  ELVKL+   V      K +  VI+  GLQG GKTT  +KLA Y +++G    L+  D +R  A DQL     +  +P Y
Sbjct:    4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SRP54_HALSA6.706e-1530.32Signal recognition 54 kDa protein OS=Halobacterium... [more]
SRP54_HALS36.706e-1530.32Signal recognition 54 kDa protein OS=Halobacterium... [more]
SRP54_SCHPO2.548e-1431.45Signal recognition particle 54 kDa protein homolog... [more]
FTSY_ECOLI7.414e-1434.13Cell division protein ftsY OS=Escherichia coli (st... [more]
SRP54_PONAB2.157e-1330.86Signal recognition particle 54 kDa protein OS=Pong... [more]
SRP54_MOUSE2.157e-1330.86Signal recognition particle 54 kDa protein OS=Mus ... [more]
SRP54_MACFA2.157e-1330.86Signal recognition particle 54 kDa protein OS=Maca... [more]
SRP54_HUMAN2.157e-1330.86Signal recognition particle 54 kDa protein OS=Homo... [more]
SRP54_CANFA2.157e-1330.86Signal recognition particle 54 kDa protein OS=Cani... [more]
SRP54_BOVIN2.157e-1330.86Signal recognition particle 54 kDa protein OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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