CX295252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HALSA (Signal recognition 54 kDa protein OS=Halobacterium salinarium GN=srp54 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 47/155 (30.32%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 L S L + L+G+ +++E++ + +++I+R+LL+ADV + +V ++++E+++ G +++IV +ELV L+G I+LAGLQG GKTT +AK+A + K+G +V D +RP A +Q + ++ V Y Sbjct: 6 LGSSLRGTLDTLRGKSRISEEDVDKVVKEIQRSLLQADVDVDLVMDLSESITERSLEEEPPGGTSARDHVLRIVYEELVGLVGDSTP----IPLEEQTIMLAGLQGSGKTTTAAKMAWWFSKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFY 156
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HALS3 (Signal recognition 54 kDa protein OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=srp54 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 47/155 (30.32%), Postives = 87/155 (56.13%), Query Frame = 3 Query: 195 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 L S L + L+G+ +++E++ + +++I+R+LL+ADV + +V ++++E+++ G +++IV +ELV L+G I+LAGLQG GKTT +AK+A + K+G +V D +RP A +Q + ++ V Y Sbjct: 6 LGSSLRGTLDTLRGKSRISEEDVDKVVKEIQRSLLQADVDVDLVMDLSESITERSLEEEPPGGTSARDHVLRIVYEELVGLVGDSTP----IPLEEQTIMLAGLQGSGKTTTAAKMAWWFSKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFY 156
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SCHPO (Signal recognition particle 54 kDa protein homolog OS=Schizosaccharomyces pombe GN=srp54 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14 Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 +F L L +A ++ +E + +++I ALLE DV++ +V+ + ++ L +G+ + + K V DEL L+ +V K RP+VI++ GLQG GKTT +KLA + +++G LVA D +R A DQL + VP + Sbjct: 2 VFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYF 160
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_ECOLI (Cell division protein ftsY OS=Escherichia coli (strain K12) GN=ftsY PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14 Identity = 43/126 (34.13%), Postives = 72/126 (57.14%), Query Frame = 3 Query: 279 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656 ++ LL ADV + R+ + ++E A + +R + L ++++E+ +++ L P VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV Sbjct: 230 ELEEQLLIADVGVETTRKIITNLTEGASR----KQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV 351
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_PONAB (Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 A++ ++TS L + N T+ E ++ M +++ ALLEADV++ +V++ + V + G+ + + V ELVKL+ V K + VI+ GLQG GKTT +KLA Y +++G L+ D +R A DQL + +P Y Sbjct: 4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MOUSE (Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 A++ ++TS L + N T+ E ++ M +++ ALLEADV++ +V++ + V + G+ + + V ELVKL+ V K + VI+ GLQG GKTT +KLA Y +++G L+ D +R A DQL + +P Y Sbjct: 4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MACFA (Signal recognition particle 54 kDa protein OS=Macaca fascicularis GN=SRP54 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 A++ ++TS L + N T+ E ++ M +++ ALLEADV++ +V++ + V + G+ + + V ELVKL+ V K + VI+ GLQG GKTT +KLA Y +++G L+ D +R A DQL + +P Y Sbjct: 4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_HUMAN (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 A++ ++TS L + N T+ E ++ M +++ ALLEADV++ +V++ + V + G+ + + V ELVKL+ V K + VI+ GLQG GKTT +KLA Y +++G L+ D +R A DQL + +P Y Sbjct: 4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_CANFA (Signal recognition particle 54 kDa protein OS=Canis familiaris GN=SRP54 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 A++ ++TS L + N T+ E ++ M +++ ALLEADV++ +V++ + V + G+ + + V ELVKL+ V K + VI+ GLQG GKTT +KLA Y +++G L+ D +R A DQL + +P Y Sbjct: 4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_BOVIN (Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 A++ ++TS L + N T+ E ++ M +++ ALLEADV++ +V++ + V + G+ + + V ELVKL+ V K + VI+ GLQG GKTT +KLA Y +++G L+ D +R A DQL + +P Y Sbjct: 4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bpback to top |