CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            AE+ G++ S ++    K+     + ++ + + + +I RALL++DVS P+V+     + +      L  G    + + + +  EL K++    S     K++P V++  GLQG GKTT   K A Y +K+G    LV  D +R  A DQL     +  +P Y
Sbjct:    4 AELGGRIMSAIQ----KMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKAKPRVVMFVGLQGSGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKSKIPYY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ENTHI (Signal recognition particle 54 kDa protein OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 45/159 (28.30%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +  QL S L  A  K+     + +E I   +++I  +LL  DV+   +R+ V  + ++     +  G+   + +   V +EL+ L+  +       K +  V+++ GLQG GKTT   KLA Y K +G    +V  D +R  A +QL +  ++ GVP +
Sbjct:    2 VLSQLGSSLVTALRKMTSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELINLVDPKTEAFKPKKGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFF 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_RAT (Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 49/162 (30.25%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            A++  ++TS L +  N      T+  E ++  M +++  ALLEADV++ +V++  + V        +  G+   + +   V  ELVKL+   V      K +  VI+  GLQG GKTT  +KLA + +++G    L+  D +R  A DQL     +  +P Y
Sbjct:    4 ADLGRKITSALRSLSNA-----TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ASPNG (Signal recognition particle 54 kDa protein homolog OS=Aspergillus niger GN=srpA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 49/152 (32.24%), Postives = 72/152 (47.37%), Query Frame = 3
Query:  207 LEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            + AA N L     L ++   + M ++I  ALL ADV++ +V+   +++        L   V   + + K V DELV L+          K R  VI+  GLQG GKTT   KLA + + +G    LV  D +R  A DQL     +  +P Y
Sbjct:   10 INAAVNDLTRSNNLDEKQAFDDMIKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPPAVNKKRLIQKAVFDELVSLVDPHAEPFRPKKGRSNVIMFVGLQGAGKTTTCTKLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYY 161          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_HAEIN (Cell division protein ftsY homolog OS=Haemophilus influenzae GN=ftsY PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  267 EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSEL-VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            E   ++   LL AD+ +P   + ++ ++E A      + ++  + L + ++ E+  ++      L + +  +P VIL+ G+ GVGKTT   KLA   + +GKS ML AGD +R AA++QL + GE+  +PV
Sbjct:  141 ELFEELEEQLLIADIGVPTTSKIIKNLTEHASR----KELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPV 267          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_AQUAE (Cell division protein ftsY homolog OS=Aquifex aeolicus GN=ftsY PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 39/130 (30.00%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  267 EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 656
            E   ++   L++ADV +       + + ++A+     + ++  +++ ++++ EL +L+     EL   +    V+L  G+ G GKTT   KLA+ LK++GK  +LVAGD +R AAI+QL +  ++ GV +
Sbjct:  193 EFFEELEEMLVKADVGVKTAVELTEKLRKEAIR----KNIKEGEKIKELLKKELKELLKNCQGELKIPEKVGAVLLFVGVNGSGKTTTIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDI 318          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 45/161 (27.95%), Postives = 80/161 (49.69%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            AE+ G++T  ++    ++     + ++ + E + +I RALL++DVS P+V+     + +      L  G    + + + +  EL K++          K++ +V++  GLQG GKTT   K A Y +K+G    LV  D +R  A DQL     +  +P Y
Sbjct:    4 AELGGRITRAIQ----QMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 45/159 (28.30%), Postives = 75/159 (47.17%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            +  QL   +  A  ++     + ++ + E + +I RALL+ADV   +VR     + +      L  G    + + + V +EL K++          K +P+V++  GLQG GKTT   K A + +K+G    LV  D +R  A DQL     +  +P Y
Sbjct:    2 VLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNLEDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = 3
Query:  177 AEMFGQLTSGLEAAWNKLKGEETLTKENIV-EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            AE+ G ++  L+   N      T+  E ++ E + +I RALL+ADV   +VR     + +      L  G    + + + V +EL K++          K +P++++  GLQG GKTT   K A Y +K+G    LV  D +R  A DQL     +  +P Y
Sbjct:    4 AELGGSISRALQQMSNA-----TIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: FTSY_HELPY (Cell division protein ftsY homolog OS=Helicobacter pylori GN=ftsY PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 3
Query:  222 NKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQ----AVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIA 665
            NK+KGEE   K+    P  ++   L+  D+   ++   ++     ++ + + V L+R VR D    K              + L    ++P V L+ G+ G GKTT  AKLA    KQ K  +L AGD +R AA+ QL + GE++ + V  A
Sbjct:   10 NKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGDSYYDK--------------TRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISA 147          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SR542_ARATH3.679e-1329.19Signal recognition particle 54 kDa protein 2 OS=Ar... [more]
SRP54_ENTHI4.806e-1328.30Signal recognition particle 54 kDa protein OS=Enta... [more]
SRP54_RAT6.276e-1330.25Signal recognition particle 54 kDa protein OS=Ratt... [more]
SRP54_ASPNG8.197e-1332.24Signal recognition particle 54 kDa protein homolog... [more]
FTSY_HAEIN1.071e-1232.06Cell division protein ftsY homolog OS=Haemophilus ... [more]
FTSY_AQUAE1.071e-1230.00Cell division protein ftsY homolog OS=Aquifex aeol... [more]
SR543_ARATH1.826e-1227.95Signal recognition particle 54 kDa protein 3 OS=Ar... [more]
SR541_SOLLC3.115e-1228.30Signal recognition particle 54 kDa protein 1 OS=So... [more]
SR542_SOLLC4.068e-1230.25Signal recognition particle 54 kDa protein 2 OS=So... [more]
FTSY_HELPY4.068e-1230.92Cell division protein ftsY homolog OS=Helicobacter... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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