CX295270

Overview
NameCX295270
Unique NameCX295270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WGASKL PVGYGI+KLQI   + DD V  D L EE
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE 261
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD V  D L EE
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE 262
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD V  D L EE
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE 262
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD V  D L EE
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE 262
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD V  D L EE
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE 262
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+SKL PVGYGI+KLQI   + DD V  D L EE
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDDKVGTDQLEEE 261
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            V+LD+KPWDDETDM ++E+ VRSVQM+GL+WGA+KL P+ YGIKKL IM  + DD VS+D L E+
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSIDELQEK 188
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLD+KPWDDETDM  +E  VRS+ M+GL+WGASKL PV +G+KKLQI   + DD VSVD L+E+
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVDELVEK 218
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            V+LDVKPWDDETD+ ++E+ VRS++M+GL+WG +KL P+GYGIKKLQI+  I D  VSVD LIE+
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK 243
[Close]
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            V+LDVKPWDDETD+ ++E+ VRS++M+GL+WG +KL P+GYGIKKLQI+  I D  VSVD LIE+
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK 193
The following BLAST results are available for this feature:
BLAST of CX295270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D_RABIT7.843e-2069.23Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT1.338e-1967.69Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MOUSE1.338e-1967.69Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1D_MACFA1.338e-1967.69Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN1.338e-1967.69Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_BOVIN2.282e-1967.69Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1B_ARTSA6.639e-1964.62Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]
EF1D_ARTSA8.671e-1963.08Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1B2_CAEEL1.479e-1864.62Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL1.479e-1864.62Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]

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Properties
Property NameValue
Genbank descriptionC05070D12SK PhIFruit1 Citrus clementina cDNA clone C05070D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295270 ID=CX295270; Name=CX295270; organism=Citrus clementina; type=EST; length=714bp
AGGCCTCGTGCCGAATTCGGCACGAGGGTAGAGACCTCGCCACTCTCCCT
CCGAGCTAATCTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCG
TCGCATTCGATAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAA
TACCTTCTTACTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGATGA
TATCACTGTGTATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCA
ATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTGGC
GTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGC
TACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACG
ATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCC
GAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGG
CAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACA
TGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTC
TGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCA
AATAATGCTTACAATTGTGGATGACTTGGTGTCTGTTGACACCCTCATTG
AGGAACACCTGCTG
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