CX295283

Overview
NameCX295283
Unique NameCX295283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.244e-81
Identity = 139/193 (72.02%), Postives = 170/193 (88.08%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGG 608
            FIV TL+ TFLSYLL IT+TL +L LLE+KWSGI LEEWWRNEQFW+IGGTSAHLAAVLQGLLKV+AGIEISFTLT+K+  +D DD FA+LY++KWTSL IPP+ ++ +N+IA+ VG+SRT+Y+ IPQ+S+L+GG FFSFWVLAH YPFAKGLMGRRGRTPTIV+VW+GLI+IT+SLLW+ I+PP  +   GG
Sbjct:  817 FIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISPPDDSVAQGG 1009          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 4.236e-81
Identity = 144/201 (71.64%), Postives = 170/201 (84.58%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQ---IGGSFQFP 623
            FIVQ L++ FL YLLT+T+TL  L +LE+KWSGIELE+WWRNEQFWLI GTSAHL AV+QGLLKV+AGIEISFTLT+K+  DD +D +ADLYIVKW+SL+IPPITI MVN+IAIA   +RTIYS  P+W + +GG FFSFWVLAHL PFAKGLMGRRG+TPTIVFVWSGL++IT+SLLWVAI+PP   +     GG FQFP
Sbjct:  947 FIVQKLDIAFLCYLLTMTITLVALGILEVKWSGIELEDWWRNEQFWLISGTSAHLYAVVQGLLKVMAGIEISFTLTAKAAADDNEDIYADLYIVKWSSLLIPPITIGMVNIIAIAFAFARTIYSDNPRWGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISPPEANSNGGARGGGFQFP 1147          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.746e-80
Identity = 148/210 (70.48%), Postives = 171/210 (81.43%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSG---------GDDVDDE-FADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQI--GGSFQFP 623
            FIVQ L+ TFL++LL IT+TL +LALLEIKWSGI L EWWRNEQFW+IGGTSAH AAVLQGLLKVIAG++ISFTLTSK G         G+  DDE FA+LY V+W+ LM+PP+TIMMVN +AIAV  +RT+YS  PQWS+L+GG FFSFWVL HLYPFAKGL+GRRGR PTIVFVWSGLI++ ISLLWV INPPAG  +   GG F FP
Sbjct: 1006 FIVQRLSATFLAFLLVITLTLCLLALLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKPGNGGGDGGVGGEGNDDEAFAELYEVRWSYLMVPPVTIMMVNAVAIAVAAARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINPPAGARERIGGGGFSFP 1215          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.320e-74
Identity = 134/197 (68.02%), Postives = 164/197 (83.25%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKS--GGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSF 614
            F+V+TL  +FL YLL IT++L  LA+LE+KWSGI LEEWWRNEQFWLIGGTSAHL AVLQG+LKVIAG+EISFTLTSKS  GGDD DDEFADLY+ KWT+LMIPP+TI+++N++AI   + RT++S  PQWS L+GG FF+ WVL H+YPFAKGLMGR G+TPT+V+VWSGLIAI +SLL++ I     +   GGSF
Sbjct:  783 FVVETLTGSFLIYLLIITLSLCGLAVLEVKWSGISLEEWWRNEQFWLIGGTSAHLVAVLQGILKVIAGVEISFTLTSKSSTGGDDEDDEFADLYLFKWTALMIPPLTIIILNIVAILFAVCRTVFSANPQWSNLLGGTFFASWVLLHMYPFAKGLMGRGGKTPTVVYVWSGLIAICLSLLYITIK---NSEIDGGSF 976          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.466e-57
Identity = 102/195 (52.31%), Postives = 141/195 (72.31%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSF 614
            FI+  ++     + + + +++++  +LE++WSG+ +E+WWRNEQFW+IGGTSAHL AV QGLLKV+AGI+ +FT+TSK+   D D +FA+LYI KWT+L+IPP T+++VNLI I  G+S  + S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV INP    N    +F
Sbjct:  882 FIIPEISNYASIWFILLFISIAVTGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKA--TDEDGDFAELYIFKWTALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFVDANPNANNF 1074          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.277e-57
Identity = 106/190 (55.79%), Postives = 138/190 (72.63%), Query Frame = 3
Query:   33 IVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQI 602
            I +  N+  L ++L +  ++   A+LE+KWS + LE+WWRNEQFW+IGGTSAHL AV QGLLKV AGI+ +FT+TSK+   D D +FA+LY+ KWTSL+IPP TI++VNL+ I  G+S  I S    W  L+G + F+FWV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV INP   T  +
Sbjct:  871 IPEISNLASLCFML-LFASIYASAILELKWSDVALEDWWRNEQFWVIGGTSAHLFAVFQGLLKVFAGIDTNFTVTSKAS--DEDGDFAELYVFKWTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVSTTGV 1057          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.621e-56
Identity = 98/184 (53.26%), Postives = 138/184 (75.00%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FI+  ++     + + + +++    +LE++WSG+ +EEWWRNEQFW+IGG SAHL AV+QGLLKV+AGI+ +FT+TSK+ GD+ DDEFA+LY  KWT+L+IPP T++++N+I +  G+S  I +    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV +WS L+A   SLLWV I+P
Sbjct:  856 FIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDE-DDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDP 1038          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.621e-56
Identity = 98/184 (53.26%), Postives = 138/184 (75.00%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FI+  ++     + + + +++    +LE++WSG+ +EEWWRNEQFW+IGG SAHL AV+QGLLKV+AGI+ +FT+TSK+ GD+ DDEFA+LY  KWT+L+IPP T++++N+I +  G+S  I +    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV +WS L+A   SLLWV I+P
Sbjct:  856 FIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDE-DDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDP 1038          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.215e-55
Identity = 100/178 (56.18%), Postives = 133/178 (74.72%), Query Frame = 3
Query:   48 NVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            ++ FLS  L+I  T     +LE++WSG+ ++EWWRNEQFW+IGG SAHL AV QG+LKV+AGI+ +FT+TSK+   D D +FA+LY+ KWT+L+IPP T+++VNL+ +  G+S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VWS L+A   SLLWV I+P
Sbjct:  877 SIWFLSLFLSIFAT----GILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKAS--DEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDP 1048          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.215e-55
Identity = 98/184 (53.26%), Postives = 134/184 (72.83%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FI+  ++     + + +  ++    +LE++WSG+ +E+WWRNEQFW+IGGTSAHL AV QGLLKV+AGI+ +FT+TSK+   D D +FA+LY+ KWTSL+IPP T++++NL+ +  G+S  I S    W  L G +FFS WV+ HLYPF KGLMGR+ RTPTIV VWS L+A   SLLWV I+P
Sbjct:  877 FIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS--DEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDP 1058          
The following BLAST results are available for this feature:
BLAST of CX295283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CSLD5_ORYSI3.244e-8172.02Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD3_ORYSJ4.236e-8171.64Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD4_ORYSJ2.746e-8070.48Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD6_ARATH1.320e-7468.02Putative cellulose synthase-like protein D6 OS=Ara... [more]
CESA1_ARATH1.466e-5752.31Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESAA_ARATH7.277e-5755.79Probable cellulose synthase A catalytic subunit 10... [more]
CESA9_ORYSJ1.621e-5653.26Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI1.621e-5653.26Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA3_ARATH5.215e-5556.18Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA1_ORYSJ5.215e-5553.26Probable cellulose synthase A catalytic subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05070F01SK PhIFruit1 Citrus clementina cDNA clone C05070F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295283 ID=CX295283; Name=CX295283; organism=Citrus clementina; type=EST; length=679bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTTCATCGTCCAGACCCTCAAT
GTTACATTCCTTTCCTACCTTCTTACCATCACTGTGACTCTAAGTATACT
AGCTTTGCTTGAAATTAAATGGTCCGGCATTGAATTAGAAGAGTGGTGGA
GAAATGAACAGTTTTGGCTGATTGGAGGCACTAGTGCTCACCTTGCTGCT
GTGCTTCAAGGGCTGCTGAAAGTCATTGCTGGAATTGAAATATCTTTCAC
CTTGACATCGAAATCAGGTGGTGATGATGTGGATGATGAGTTTGCTGATC
TTTACATTGTCAAATGGACATCTCTAATGATACCGCCAATCACAATCATG
ATGGTTAACTTAATTGCAATAGCAGTCGGGTTGAGCAGAACAATTTACAG
TGTTATACCACAATGGAGTCGCTTAGTGGGTGGAGTTTTCTTCAGTTTCT
GGGTTTTGGCCCATCTCTATCCTTTCGCAAAAGGGCTTATGGGAAGAAGA
GGCAGAACACCTACCATTGTTTTTGTATGGTCAGGACTTATCGCAATCAC
CATCTCTCTCCTTTGGGTGGCAATCAATCCTCCAGCTGGTACTAACCAAA
TAGGAGGTTCATTCCAGTTCCCATAATAGGTCATTCTTCTTCTCTTCAGT
TTAATCTTTTTATTGACATTCCTTCATTT
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