CX295283

Overview
NameCX295283
Unique NameCX295283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.678e-53
Identity = 97/184 (52.72%), Postives = 133/184 (72.28%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FI   L      + +++ + +    +LE++WSG+ +++WWRNEQFW+IGG S+HL AV QGLLKVIAGI+ SFT+TSK GGDD  +EF++LY  KWT+L+IPP T++++N I +  G+S  I +    W  L G +FF+FWV+ HLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV I+P
Sbjct:  894 FITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVIAGIDTSFTVTSK-GGDD--EEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDP 1074          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.861e-53
Identity = 96/184 (52.17%), Postives = 133/184 (72.28%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FI   L      + +++ + +    +LE++WSG+ +++WWRNEQFW+IGG S+HL A+ QGLLKVIAGI+ SFT+TSK GGDD  +EF++LY  KWT+L+IPP T++++N I +  G+S  I +    W  L G +FF+FWV+ HLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV I+P
Sbjct:  895 FITPELTNVASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVIAGIDTSFTVTSK-GGDD--EEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDP 1075          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.881e-53
Identity = 93/184 (50.54%), Postives = 133/184 (72.28%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FI+ T+N     + L + +++   A+LE++WSG+ + + WRNEQFW+IGG SAHL AV QGLLKV+ G++ +FT+TSK   D+ D EF DLY+ KWT+L+IPP T++++N++ +  G+S  I +    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV +WS L+A   SL+WV I+P
Sbjct:  850 FIIPTINNFASIWFLALFLSIIATAILELRWSGVSINDLWRNEQFWVIGGVSAHLFAVFQGLLKVLFGVDTNFTVTSKGASDEAD-EFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDP 1032          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.422e-52
Identity = 94/184 (51.09%), Postives = 134/184 (72.83%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FI+ TL+       L + +++ + ++LE++WSG+ +E+ WRNEQFW+IGG SAHL AV QG LK++AG++ +FT+TSK+  DD+  EF +LYIVKWT+L+IPP +++++NL+ +  G S  +      W  L G VFF+FWV+ HLYPF KGLMGR+ RTPTIV +WS L+A   SL+WV INP
Sbjct:  786 FIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKTA-DDL--EFGELYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINP 966          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.568e-51
Identity = 89/184 (48.37%), Postives = 133/184 (72.28%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FIV  ++       + +  ++++  +LE++W  + +++WWRNEQFW+IGG SAHL A+ QGLLKV+AG+E +FT+TSK+  D    EF++LYI KWTSL+IPP T++++N+I + VG+S  I +    W  L G +FF+FWV+ HLYPF KGL+G++ R PTI+ VWS L+A  ++LLWV +NP
Sbjct:  872 FIVPEISNYASILFMALFGSIAVTGILEMQWGKVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVETNFTVTSKAADDG---EFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNP 1052          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.736e-50
Identity = 88/184 (47.83%), Postives = 133/184 (72.28%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FIV  ++       + +  +++I  +LE++W  + +++WWRNEQFW+IGG SAHL A+ QGLLKV+AG++ +FT+TSK+  D    EF+DLY+ KWTSL+IPP+T++++N+I + VG+S  I +    W  L G +FF+ WV+ HLYPF KGL+G++ R PTI+ VWS L+A  ++LLWV +NP
Sbjct:  887 FIVPEISNYASILFMALFSSIAITGILEMQWGKVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKAADDG---EFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNP 1067          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.597e-50
Identity = 88/177 (49.72%), Postives = 128/177 (72.32%), Query Frame = 3
Query:   51 VTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            + FL   ++I VT     +LE++W  I +++WWRNEQFW+IGG S+HL A+ QGLLKV+AG+  +FT+TSK+  D    EF++LYI KWTSL+IPP T++++N++ + VG+S  I +    W  L G +FF+ WV+ HLYPF KGL+G++ R PTI+ VWS L+A  ++LLWV +NP
Sbjct:  901 ILFLLMFMSIAVT----GILEMQWGKIGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDG---EFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNP 1070          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 83/184 (45.11%), Postives = 132/184 (71.74%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINP 581
            FIV  ++       + + +++++  +LE++W G+ +++WWRNEQFW+IGG S+HL A+ QGLLKV+AG+  +FT+TSK+  D     F++LYI KWT+L+IPP T++++N+I + VG+S  I +    W  L G +FF+ WV+ HLYPF KG++G++ + PTI+ VWS L+A  ++LLWV +NP
Sbjct:  886 FIVPEISNYAGILFMLMFISIAVTGILEMQWGGVGIDDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGA---FSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNP 1066          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.388e-46
Identity = 91/195 (46.67%), Postives = 128/195 (65.64%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSK-SGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGS 611
            FIVQ     F  YL  +  TL ILA+LE+KW+G+ + EW+RN QFW+    SA+LAAVLQ + KV+   +ISF LTSK   GD+  D +ADLY+V+WT LMI PI I++VN+I  AV  ++ +      W ++ GGVFF+FWVL HLYPFAKG++G+ G+TP +V VW     +  ++L++ I    G  + G +
Sbjct:  736 FIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQVVTKVVFRRDISFKLTSKLPAGDEKKDPYADLYVVRWTWLMITPIIIILVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYINIPHIHGPGRHGAA 930          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 73/189 (38.62%), Postives = 113/189 (59.79%), Query Frame = 3
Query:   57 FLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNL--IAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPP--AGTNQIGGS 611
            +L YL+ I   + ++ + E+KWSGI + +W RNEQF++IG T  +  AVL   LK+  G  I F LTSK       D+FADLY V+W  L+IP I ++ VN+  + +AVG +     +  Q    V G+ F+ W+LA LYPFA G+MG+RG+ P ++FV + +    +++++ A   P  AG + +  S
Sbjct:  697 YLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRNEQFYMIGSTGVYPTAVLYMALKLFTGKGIHFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVVLAVNVGAVGVAVGKAAAWGLLTEQGRFAVLGMVFNVWILALLYPFALGIMGQRGKRPAVLFVATVMAVAAVAIMYAAFGAPYQAGLSGVAAS 885          
The following BLAST results are available for this feature:
BLAST of CX295283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CESA5_ORYSI1.678e-5352.72Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ORYSJ2.861e-5352.17Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA4_ARATH4.881e-5350.54Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA8_ARATH2.422e-5251.09Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA5_ARATH4.568e-5148.37Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA6_ARATH1.736e-5047.83Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA9_ARATH6.597e-5049.72Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA2_ARATH4.276e-4945.11Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CSLF6_ORYSJ3.388e-4646.67Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF4_ORYSJ1.928e-3338.62Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070F01SK PhIFruit1 Citrus clementina cDNA clone C05070F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295283 ID=CX295283; Name=CX295283; organism=Citrus clementina; type=EST; length=679bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTTCATCGTCCAGACCCTCAAT
GTTACATTCCTTTCCTACCTTCTTACCATCACTGTGACTCTAAGTATACT
AGCTTTGCTTGAAATTAAATGGTCCGGCATTGAATTAGAAGAGTGGTGGA
GAAATGAACAGTTTTGGCTGATTGGAGGCACTAGTGCTCACCTTGCTGCT
GTGCTTCAAGGGCTGCTGAAAGTCATTGCTGGAATTGAAATATCTTTCAC
CTTGACATCGAAATCAGGTGGTGATGATGTGGATGATGAGTTTGCTGATC
TTTACATTGTCAAATGGACATCTCTAATGATACCGCCAATCACAATCATG
ATGGTTAACTTAATTGCAATAGCAGTCGGGTTGAGCAGAACAATTTACAG
TGTTATACCACAATGGAGTCGCTTAGTGGGTGGAGTTTTCTTCAGTTTCT
GGGTTTTGGCCCATCTCTATCCTTTCGCAAAAGGGCTTATGGGAAGAAGA
GGCAGAACACCTACCATTGTTTTTGTATGGTCAGGACTTATCGCAATCAC
CATCTCTCTCCTTTGGGTGGCAATCAATCCTCCAGCTGGTACTAACCAAA
TAGGAGGTTCATTCCAGTTCCCATAATAGGTCATTCTTCTTCTCTTCAGT
TTAATCTTTTTATTGACATTCCTTCATTT
back to top