CX295283

Overview
NameCX295283
Unique NameCX295283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 70/179 (39.11%), Postives = 107/179 (59.78%), Query Frame = 3
Query:   57 FLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIY---SVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPP 584
            +L YL+ +   + ++ + E+KW+GI L +W RNEQF++IG T  +  AVL   LK++ G  I F LTSK       D+FADLY V+W  L+IP I IM+VN+ A+ V + +         P W  ++G V F+ W+L  LYPFA G+MG+ G+ P ++FV   +    ++ ++VA   P
Sbjct:  658 YLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFADLYTVRWVPLLIPTIVIMVVNVAAVGVAVGKAAAWGPLTEPGWLAVLGMV-FNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVAFGAP 835          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 71/188 (37.77%), Postives = 110/188 (58.51%), Query Frame = 3
Query:   57 FLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIY---SVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGS 611
            +L YL+ +   + ++ + E+KW+GI L +W RNEQF++IG T  +  AVL   LK++ G  I F LTSK       D+FADLY V+W  L+IP I I++VN+ A+ V + +         P W  ++G V F+ W+L  LYPFA G+MG+ G+ P ++FV   +    ++ ++VA   P      GG+
Sbjct:  688 YLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVIIVVNVAAVGVAVGKAAAWGPLTEPGWLAVLGMV-FNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVAFGAPYQAELSGGA 874          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 78/182 (42.86%), Postives = 110/182 (60.44%), Query Frame = 3
Query:   54 TFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDV------DDEFADLYIVKWTSLMIPPITIMMVNL--IAIAVGLSRTIYSVIPQWSRLVGG---VFFSFWVLAHLYPFAKGLMGRRGR-TPTIVFVWSGLIAITISLL 563
            T++++L  + VTL+ +A+LE +WSGI L EWWRNEQFW++  TSA+LAAV Q  LKV  G EISF LTSK            D ++A+LY V+WT+LM P    + VN+  +A A G  R  +   P  +        V F+ WV+ HLYPFA GLMGRR +    I+F+++ +  + +  L
Sbjct:  640 TYVAFLAALMVTLAAVAVLETRWSGIALGEWWRNEQFWMVSATSAYLAAVAQVALKVATGKEISFKLTSKHLASSATPVAGKDRQYAELYAVRWTALMAPTAAALAVNVASMAAAGGGGRWWWWDAPSAAAAAAAALPVAFNVWVVVHLYPFALGLMGRRSKAVRPILFLFAVVAYLAVRFL 821          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 66/186 (35.48%), Postives = 108/186 (58.06%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIE-ISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYS--VIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAIN 578
            F +Q    T+++YL+ +   + ++ L+EIKW+G+ L +WWRNEQF++IG T  +LAAVL  +LK + G++ + F LT+K       + FA+LY V W+ L+ P + +M VN+ AI     + +       Q +    G+ F+ WVL  LYPFA G+MGR  + P  +F         ++  +VA++
Sbjct:  666 FHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKRLLGLKGVRFKLTAKQLAGGARERFAELYDVHWSPLLAPTVVVMAVNVTAIGAAAGKAVVGGWTPAQVAGASAGLVFNVWVLVLLYPFALGIMGRWSKRPCALFALLVAACAAVAAGFVAVH 851          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.293e-29
Identity = 66/176 (37.50%), Postives = 110/176 (62.50%), Query Frame = 3
Query:   57 FLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSR-TIYS---VIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVA 572
            ++ YLL I + + ++  LEIKW+GI   ++WRNEQF++IG TSA+  AVL  ++ ++    I F +TSK    D +D+FADLY ++W  ++IP + +++ N+ AI V + +  +Y     I Q    + G+ F+ WV+  LYPFA  +MGR  + P I+ V   +I + ++L++VA
Sbjct:  682 YVVYLLMIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKMAVYMGVWTIAQKRHAIMGLLFNMWVMFLLYPFALAIMGRWAKRPIILVVLLPIIFVIVALVYVA 857          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.915e-29
Identity = 66/176 (37.50%), Postives = 109/176 (61.93%), Query Frame = 3
Query:   57 FLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRT-IYS---VIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVA 572
            ++ YLL I + + ++  LEIKW+GI   ++WRNEQF++IG TSA+  AVL  ++ ++    I F +TSK    D +D+FADLY ++W  ++IP + +++ N+ AI V + +T +Y     I Q      G+ F+ WV+  LYPFA  +MGR  +   I+ V   +I + ++L++VA
Sbjct:  682 YVVYLLVIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKTAVYMGVWTIAQKRHAAMGLLFNMWVMFLLYPFALAIMGRWAKRSIILVVLLPIIFVIVALVYVA 857          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 64/184 (34.78%), Postives = 107/184 (58.15%), Query Frame = 3
Query:   30 FIVQTLNVTFLSYLLTITVTLSILALLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGLSRTIYS--VIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAI 575
            F +Q    T++ YL+ +     ++ ++EIKW+G+ L +W RNEQF++IG T+ +  AVL  +LK      +SF LT+K       ++FA+LY V+W  L+ P I ++ VN+ AI   + + ++    + Q      G+ F+ W+L  +YPFA G+MGR  + P I+FV   +  + I+L  +AI
Sbjct:  677 FYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLDWIRNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKFAELYDVQWAPLLFPTIVVIAVNICAIGAAIGKALFGGWSLMQMGDASLGLVFNVWILLLIYPFALGIMGRWSKRPYILFVLIVISFVIIALADIAI 860          
BLAST of CX295283 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.297e-25
Identity = 65/191 (34.03%), Postives = 105/191 (54.97%), Query Frame = 3
Query:   48 NVTFLSYLLTITVTLSILA--LLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTS--------KSGGDDVDDE--FADLYIVKWTSLMIPPITIMMVNL----IAIAVGLSRTIYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRT-PTIVFVWSGLIAITISLLWV 569
            +V++   +L I +  S+ A   LE++WS + L  WWR+E+ W++  TSA LAAV QG+L    GI+++F+  +         +G DD ++E   A    ++WT+L++ P ++++ NL     A+A G+    Y     W  L   +  + WV+AHL  F +GL+  R R  PTI  +WS +     SLLWV
Sbjct:  654 DVSYYDGVLLILLLFSVAASVALELRWSRVPLRAWWRDEKLWMVTATSASLAAVFQGILSACTGIDVAFSTETAASPPKRPAAGNDDGEEEAALASEITMRWTNLLVAPTSVVVANLAGVVAAVAYGVDHGYYQ---SWGALGAKLALAGWVVAHLQGFLRGLLAPRDRAPPTIAVLWSVVFVSVASLLWV 841          
The following BLAST results are available for this feature:
BLAST of CX295283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CSLF1_ORYSJ4.296e-3339.11Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF2_ORYSJ5.610e-3337.77Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF7_ORYSJ6.203e-3242.86Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLF9_ORYSJ7.583e-3035.48Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF3_ORYSI1.293e-2937.50Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSJ4.915e-2937.50Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF8_ORYSJ4.161e-2834.78Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CESAB_ORYSJ3.297e-2534.03Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionC05070F01SK PhIFruit1 Citrus clementina cDNA clone C05070F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295283 ID=CX295283; Name=CX295283; organism=Citrus clementina; type=EST; length=679bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTTCATCGTCCAGACCCTCAAT
GTTACATTCCTTTCCTACCTTCTTACCATCACTGTGACTCTAAGTATACT
AGCTTTGCTTGAAATTAAATGGTCCGGCATTGAATTAGAAGAGTGGTGGA
GAAATGAACAGTTTTGGCTGATTGGAGGCACTAGTGCTCACCTTGCTGCT
GTGCTTCAAGGGCTGCTGAAAGTCATTGCTGGAATTGAAATATCTTTCAC
CTTGACATCGAAATCAGGTGGTGATGATGTGGATGATGAGTTTGCTGATC
TTTACATTGTCAAATGGACATCTCTAATGATACCGCCAATCACAATCATG
ATGGTTAACTTAATTGCAATAGCAGTCGGGTTGAGCAGAACAATTTACAG
TGTTATACCACAATGGAGTCGCTTAGTGGGTGGAGTTTTCTTCAGTTTCT
GGGTTTTGGCCCATCTCTATCCTTTCGCAAAAGGGCTTATGGGAAGAAGA
GGCAGAACACCTACCATTGTTTTTGTATGGTCAGGACTTATCGCAATCAC
CATCTCTCTCCTTTGGGTGGCAATCAATCCTCCAGCTGGTACTAACCAAA
TAGGAGGTTCATTCCAGTTCCCATAATAGGTCATTCTTCTTCTCTTCAGT
TTAATCTTTTTATTGACATTCCTTCATTT
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