CX295300

Overview
NameCX295300
Unique NameCX295300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6497 contig Ccv1_Contig6497:402..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295300 vs. ExPASy Swiss-Prot
Match: OSH3_YEAST (Oxysterol-binding protein homolog 3 OS=Saccharomyces cerevisiae GN=OSH3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 73/228 (32.02%), Postives = 113/228 (49.56%), Query Frame = 2
Query:   44 GVLTLEFDD-GEVFQWSKVTSSIYNLILGKLYCDHYGTMRIEGNREYSCKLKFKEQSIIDRNPH--QVHGIVQDRNGKTVATLFGKWDESIHYVIGECSGKGKELESLSEACLLWKR----SKPPKYATRYNFTRFAITLNEVTPGLKEKLPPTDSRLRPDQRCLENGEYEMANSEKLRLEQRQRQARKMQENGWKPRWFAKDRATGTYRYIGG---YWEARETGDWN 697
            G+L L+F   GE+F+W++ T+ + NLI G+ Y +      +  ++     + F +  +        +V  I    + +   TL GKW +S+              E+  E   +W+     S P K   +Y FT+F   LNE+T   K  LPPTDSRLRPD R  E G  + A   KL+LEQ QR+ R   ++  +P++F K  +   ++YI G   YWE R+  DW+
Sbjct:  782 GILRLKFKTTGELFEWTQPTTILKNLIAGERYMEPVNEFEVHSSKGDKSHILFDKAGMFSGRSEGFKVSIIPPPSSNRKKETLAGKWTQSLAN------------ETTHET--IWEVGDLVSNPKK---KYGFTKFTANLNEITEIEKGNLPPTDSRLRPDIRAYEEGNVDKAEEWKLKLEQLQRERRNKGQD-VEPKYFEK-VSKNEWKYITGPKSYWERRKKHDWS 990          
BLAST of CX295300 vs. ExPASy Swiss-Prot
Match: OSB8_DICDI (Oxysterol-binding protein 8 OS=Dictyostelium discoideum GN=osbH PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 72/212 (33.96%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   80 FQWSKVTSSIYNLILGKLYCDHYGTMRIEGNREYS-CKLKFKEQSIIDRNPHQVHGIVQDRNGKTVATLFGKWDESIHYVIGECSGKGKELESLSEACLLWKRSKPPKYATRYNFTRFA----ITLNEVTPGLKEKLPPTDSRLRPDQRCLENGEYEMANSEKLRLEQRQRQARKM---QENGWKPRWFAK-DRATGTYR--YIGGYWEARE 682
            + W+ + +  +N+I+G L+ DHYG + IE +   S   LKF +   +    + V G + D  G     + GKW+ESI       +G      S +  CL W+ SK P    ++ F R+     I LN+     K+ LP TDSRLR D+  LE G  ++A  EK  LE++QR+ ++    +   W+   F K D A   YR  Y G YWE RE
Sbjct:  191 YTWNHLVTCCHNIIIGSLWLDHYGDLVIENHTTGSKAVLKFAKSGWLGAGRYGVTGEIVDCEGDVRYRITGKWNESIQLFQVMDNGSS----STTSTCL-WEASKEP-INNKFLFPRWVEENVIDLNDE---YKKILPVTDSRLRADRIALEEGNLDVAAKEKHNLEEKQREDKRQRVAENKEWETAQFKKVDDAKFGYRWNYCGNYWEERE 393          
The following BLAST results are available for this feature:
BLAST of CX295300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
OSH3_YEAST5.650e-2132.02Oxysterol-binding protein homolog 3 OS=Saccharomyc... [more]
OSB8_DICDI1.392e-1933.96Oxysterol-binding protein 8 OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionC05070G06SK PhIFruit1 Citrus clementina cDNA clone C05070G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295300 ID=CX295300; Name=CX295300; organism=Citrus clementina; type=EST; length=732bp
ATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGCCCTGTTGGTGTCT
TAACTTTGGAATTTGATGATGGAGAAGTTTTCCAATGGAGTAAGGTTACC
TCATCAATCTATAATCTCATATTGGGAAAGTTGTACTGTGATCACTATGG
TACAATGCGTATAGAGGGAAATCGTGAGTACTCGTGTAAGCTGAAATTCA
AAGAGCAGTCTATCATTGACAGAAATCCACATCAGGTACATGGCATAGTT
CAAGACAGGAATGGAAAAACAGTGGCAACCCTATTTGGAAAATGGGATGA
GAGCATCCATTACGTGATTGGAGAATGTTCTGGAAAGGGAAAAGAACTTG
AGTCTTTATCAGAAGCTTGCCTGCTCTGGAAGCGGAGCAAGCCTCCCAAA
TATGCCACCAGATATAACTTCACTCGTTTTGCCATCACATTGAATGAAGT
CACCCCTGGTCTGAAGGAAAAGTTGCCTCCAACAGATTCGAGGCTCAGAC
CTGACCAAAGGTGTTTGGAAAATGGGGAGTATGAGATGGCAAATTCAGAA
AAGTTGCGGCTAGAGCAGCGACAACGGCAGGCTCGGAAGATGCAAGAGAA
TGGCTGGAAGCCAAGATGGTTTGCAAAGGATAGGGCAACCGGTACATATC
GCTACATTGGCGGGTACTGGGAAGCGAGAGAAACAGGAGATTGGAACTTA
TGTCCTGATATATTTGGTCATATCCCTTCTGA
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