CX295305
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15 Identity = 66/219 (30.14%), Postives = 105/219 (47.95%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 + +V ++RRREGKTD+R R+ L+ K R V R + +IIAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ ++ EG E A+LD GL + T G +F IP G+++ A+ R + G H+ Y L EDE E Y+ F++Y++KG++ + Sbjct: 6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPE 177
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15 Identity = 66/219 (30.14%), Postives = 105/219 (47.95%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 + +V ++RRREGKTD+R R+ L+ K R V R + +IIAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ ++ EG E A+LD GL + T G +F IP G+++ A+ R + G H+ Y L EDE E Y+ F++Y++KG++ + Sbjct: 8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPE 179
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_PYRAB (50S ribosomal protein L18P OS=Pyrococcus abyssi GN=rpl18p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15 Identity = 67/224 (29.91%), Postives = 101/224 (45.09%), Query Frame = 3 Query: 75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 A+ R++V ++RRREGKT+YR R++L+ K R VVR + IAQI+ + GD L +A+ EL R +G + N +AY GLL+ + K +E A+LD+GL G+ VF +PHS + F E +R I G H+A Y L E + EK++ F Y++KG+D + Sbjct: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPE 179
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15 Identity = 65/219 (29.68%), Postives = 96/219 (43.84%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 R++V KRRREGKT+Y R +LI K R VVR ++ I QI A GD V+A+A+++EL +YG + N A Y G L A++ LK +G E A++D+GL + +RVF IP D +D + + G H+A Y L E PE ++ F+ Y+ G+D + Sbjct: 6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD---GVLPEDDR----------VRGEHIANYAKMLKESNPELFKLRFSGYLSAGLDPE 178
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15 Identity = 61/192 (31.77%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 662 R+ V ++RRREG+TDY R +L+ D R VVR TN+ II Q+V+A + GD L +A + EL +YG N AAY TGLL A + K G+D A+LD+GL + T G RVF IP+ + + + G H+AAY Sbjct: 6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15 Identity = 62/201 (30.85%), Postives = 89/201 (44.28%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEP 689 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD +A+A++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +PH+D A +S+ G H+A Y +L DEP Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP 158
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15 Identity = 62/201 (30.85%), Postives = 89/201 (44.28%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEP 689 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD +A+A++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +PH+D A +S+ G H+A Y +L DEP Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP 158
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15 Identity = 66/224 (29.46%), Postives = 101/224 (45.09%), Query Frame = 3 Query: 75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 A+ R++V ++RRREGKT+Y R+ L+ K R VVR + IAQIV + GD + +A+ EL R +G + N +AY GLL+ + K G D A+LD+GL T G+ VF +PHS+ ++ E +R I G H+A Y L E++ KY+ F+ Y+ KG++ + Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--ITGEHIANYAKALKEEDEGKYRKQFSSYLVKGLEPE 179
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15 Identity = 66/225 (29.33%), Postives = 92/225 (40.89%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED------EPEKYQSHFTEYIKKGIDAD 743 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD LA+A++ +L YG E N +AY TGLL R E VE A+LD+GL T G++VF IPH+D A + + G H+A Y L E + HF E + +D D Sbjct: 6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR-------------TRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGD 184
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14 Identity = 65/224 (29.02%), Postives = 97/224 (43.30%), Query Frame = 3 Query: 75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 A+ R++V ++RRREGKT+YR R++L+ K R VVR + IAQI+ + GD L +A+ EL R +G + N +AY GLL+ Y + A A+LD+GL G+ VF +PHS + F + I G H+A Y L E + EK++ F Y+ KG+D + Sbjct: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYR-------------IRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPE 179 The following BLAST results are available for this feature:
BLAST of CX295305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295305 ID=CX295305; Name=CX295305; organism=Citrus clementina; type=EST; length=744bpback to top |