CX295305

Overview
NameCX295305
Unique NameCX295305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 66/219 (30.14%), Postives = 105/219 (47.95%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            + +V ++RRREGKTD+R R+ L+   K        R V R +  +IIAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP            G+++ A+  R  + G H+  Y   L EDE E Y+  F++Y++KG++ +
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPE 177          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 66/219 (30.14%), Postives = 105/219 (47.95%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            + +V ++RRREGKTD+R R+ L+   K        R V R +  +IIAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP            G+++ A+  R  + G H+  Y   L EDE E Y+  F++Y++KG++ +
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPE 179          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_PYRAB (50S ribosomal protein L18P OS=Pyrococcus abyssi GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 67/224 (29.91%), Postives = 101/224 (45.09%), Query Frame = 3
Query:   75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL     G+ VF            +PHS + F            E +R  I G H+A Y   L E + EK++  F  Y++KG+D +
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPE 179          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 65/219 (29.68%), Postives = 96/219 (43.84%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            R++V  KRRREGKT+Y  R +LI   K        R VVR  ++  I QI  A   GD V+A+A+++EL +YG +    N  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF            IP  D       +D +          + G H+A Y   L E  PE ++  F+ Y+  G+D +
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD---GVLPEDDR----------VRGEHIANYAKMLKESNPELFKLRFSGYLSAGLDPE 178          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15
Identity = 61/192 (31.77%), Postives = 84/192 (43.75%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 662
            R+ V ++RRREG+TDY  R +L+  D         R VVR TN+ II Q+V+A + GD  L +A + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ +       +             + G H+AAY
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15
Identity = 62/201 (30.85%), Postives = 89/201 (44.28%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEP 689
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP 158          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15
Identity = 62/201 (30.85%), Postives = 89/201 (44.28%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEP 689
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP 158          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 66/224 (29.46%), Postives = 101/224 (45.09%), Query Frame = 3
Query:   75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            A+  R++V ++RRREGKT+Y  R+ L+   K        R VVR +    IAQIV  +  GD  + +A+  EL R +G +    N  +AY  GLL+  +  K               G D             A+LD+GL   T G+ VF            +PHS+           ++  E +R  I G H+A Y   L E++  KY+  F+ Y+ KG++ +
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--ITGEHIANYAKALKEEDEGKYRKQFSSYLVKGLEPE 179          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 66/225 (29.33%), Postives = 92/225 (40.89%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED------EPEKYQSHFTEYIKKGIDAD 743
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  LA+A++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF            IPH+D   A + +               G H+A Y   L E       +      HF E  +  +D D
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR-------------TRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGD 184          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 65/224 (29.02%), Postives = 97/224 (43.30%), Query Frame = 3
Query:   75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    N  +AY  GLL+                        Y  + A       A+LD+GL     G+ VF            +PHS + F    +             I G H+A Y   L E + EK++  F  Y+ KG+D +
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYR-------------IRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPE 179          
The following BLAST results are available for this feature:
BLAST of CX295305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL18_METVS1.257e-1530.1450S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA1.257e-1530.1450S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_PYRAB2.144e-1529.9150S ribosomal protein L18P OS=Pyrococcus abyssi GN... [more]
RL18_THEPD3.657e-1529.6850S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_METB64.777e-1531.7750S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_HALSA4.777e-1530.8550S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALS34.777e-1530.8550S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_THEON8.148e-1529.4650S ribosomal protein L18P OS=Thermococcus onnurin... [more]
RL18_HALMA8.148e-1529.3350S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_PYRFU1.064e-1429.0250S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionC05070G11SK PhIFruit1 Citrus clementina cDNA clone C05070G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295305 ID=CX295305; Name=CX295305; organism=Citrus clementina; type=EST; length=744bp
GAGGCTTCCCTCTCCTTTTCTCTTACAATTCGAAAGTTCGAGCAATGGCC
TTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAA
GTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCC
TGATTAATCAGGACAAGAATAAGTACAACACACCCAAGTACCGATTTGTT
GTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACAT
TGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTT
ATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGG
CTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTA
TGAGGGCAATGTTGAGGCTACTGGAGAGGATTACTCTGTCGAACCAGCTG
ATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACA
ACAACTGGAAACCGTGTGTTTGGTGCTCTGAAGGGAGCATTAGATGGTGG
ATTGGACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAAGGACG
GCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACAT
GTTGCTGCTTACATGAGTACATTGATGGAAGATGAGCCAGAGAAGTATCA
ATCTCACTTCACTGAGTACATCAAGAAAGGAATTGATGCTGATG
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