CX295305

Overview
NameCX295305
Unique NameCX295305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:16..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 65/224 (29.02%), Postives = 99/224 (44.20%), Query Frame = 3
Query:   75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            A+  R++V ++RRREGKT+Y  R+ L+   K        R VVR T    +AQIV     GD  + +A+  EL R +G +    N  +AY  GLL+  + L         E  +E                  A+LD+GL   T G+ +F            +PHS++ + G              + I G H+A Y   L ED+ E Y+  F  Y+ KG++ +
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKMLKEDD-ENYKKQFGGYLVKGLEPE 178          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 64/224 (28.57%), Postives = 101/224 (45.09%), Query Frame = 3
Query:   75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL     G+ +F            +PHS + F            E +R  I G H+A Y   L E + ++++  F  Y++KG+D +
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPE 179          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 65/217 (29.95%), Postives = 97/217 (44.70%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGI 734
            R++V ++RRREGKT+Y  R  LI  D         R V R T    IAQIV     GD  LA+A++ EL  ++G +    N  AAY TG L   R L         E  +E                 RA++D+GL +   G+RVF            IPH ++      +             I G H+A     + E++PE+Y+  F++Y+++G+
Sbjct:    9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRAL---------ERGIE-----------------RAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGL 179          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 64/220 (29.09%), Postives = 99/220 (45.00%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            R++V ++RRREGKT+Y  R++L+        + K R VVR +    IAQI+  N  GD  + +A+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL   T G+ VF            +PHS++ F            E +R  I G HVA Y   L +++   Y+  F  Y+ KG++ +
Sbjct:    6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIF-----------PEDYR--IRGEHVAEYAKALKQEDETLYRKQFGGYLVKGLEPE 179          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 572
            R+ V ++RR EGKTDY  R+ L++       TP  R VVR TN+ II Q+V   + GDS L AAY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ +
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 65/224 (29.02%), Postives = 101/224 (45.09%), Query Frame = 3
Query:   75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            A+  R++V ++RRREGKT+Y  R++L+        + K R VVR T    IAQIV  +  GD  L +A+  EL R +G +    N  +AY  GLL+                        Y  + A       A+LD+GL   T G+ +F            +PHS+           ++  E +R  I G H+A Y   L E++   Y+  F+ Y+ KG++ +
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--INGEHIANYAKALKEEDEALYRKQFSGYLVKGLEPE 179          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_SULAC (50S ribosomal protein L18P OS=Sulfolobus acidocaldarius GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 62/217 (28.57%), Postives = 92/217 (42.40%), Query Frame = 3
Query:   90 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGID 737
            +++K++RRREGKTDY  R   +  +         RFV R TNK +I  +   +  GD ++A A++ EL  +YG +    N  AAY TG L   R +K           V+A                 A+ D+GL     G R+F            +P  D         GK  D       + G H++AY   L  +  E Y   F+ YI++G+D
Sbjct:    7 YRIKFRRRREGKTDYYTRYTYVINNA-------IRFVPRLTNKYVIVSVSKFDQKGDIMIAYAHSIELVKKYGWKGDTNNTPAAYLTGYLAGLRAVK---------SGVKA-----------------AVSDIGLFVPVKGGRIFAVIKGAIDAGLKVPVGDL--------GKLKDR------VNGSHISAYAQKLKNENQELYNKLFSSYIQRGLD 176          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 64/206 (31.07%), Postives = 91/206 (44.17%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQS 704
            R+ V ++RRREGKTDY  R +LI  ++        R VVR TN+ II Q++ A + GD  L  A + EL  YG +   +N  AAY TG+L A                V+A   D+   PA       A+LD+GL + T G +VF            +PH ++      +             + G H+AAY      D  E  +S
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAYAPDRAGDLVENVES 165          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 64/217 (29.49%), Postives = 93/217 (42.86%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGI 734
            R++V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q++     GD V+AAA++ EL + YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF            +P  D                     I G H+A+Y  +L  + PE+YQ  F + +++G+
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD--------------VVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGL 175          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   51 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 191
            FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTP +
Sbjct:    2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48          
The following BLAST results are available for this feature:
BLAST of CX295305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL18_THESM1.390e-1429.0250S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_PYRHO1.390e-1428.5750S ribosomal protein L18P OS=Pyrococcus horikoshi... [more]
RL18_METKA1.815e-1429.9550S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_THEGJ2.371e-1429.0950S ribosomal protein L18P OS=Thermococcus gammato... [more]
RL18_METMJ2.371e-1434.5750S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_PYRKO3.096e-1429.0250S ribosomal protein L18P OS=Pyrococcus kodakarae... [more]
RL18_SULAC5.281e-1428.5750S ribosomal protein L18P OS=Sulfolobus acidocald... [more]
RL18_METPE5.281e-1431.0750S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_IGNH45.281e-1429.4950S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL5_RABIT1.177e-1374.4760S ribosomal protein L5 (Fragments) OS=Oryctolagu... [more]

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Properties
Property NameValue
Genbank descriptionC05070G11SK PhIFruit1 Citrus clementina cDNA clone C05070G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295305 ID=CX295305; Name=CX295305; organism=Citrus clementina; type=EST; length=744bp
GAGGCTTCCCTCTCCTTTTCTCTTACAATTCGAAAGTTCGAGCAATGGCC
TTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAA
GTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCC
TGATTAATCAGGACAAGAATAAGTACAACACACCCAAGTACCGATTTGTT
GTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACAT
TGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTT
ATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGG
CTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTA
TGAGGGCAATGTTGAGGCTACTGGAGAGGATTACTCTGTCGAACCAGCTG
ATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACA
ACAACTGGAAACCGTGTGTTTGGTGCTCTGAAGGGAGCATTAGATGGTGG
ATTGGACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAAGGACG
GCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACAT
GTTGCTGCTTACATGAGTACATTGATGGAAGATGAGCCAGAGAAGTATCA
ATCTCACTTCACTGAGTACATCAAGAAAGGAATTGATGCTGATG
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