CX295305
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14 Identity = 65/224 (29.02%), Postives = 99/224 (44.20%), Query Frame = 3 Query: 75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 A+ R++V ++RRREGKT+Y R+ L+ K R VVR T +AQIV GD + +A+ EL R +G + N +AY GLL+ + L E +E A+LD+GL T G+ +F +PHS++ + G + I G H+A Y L ED+ E Y+ F Y+ KG++ + Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKMLKEDD-ENYKKQFGGYLVKGLEPE 178
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14 Identity = 64/224 (28.57%), Postives = 101/224 (45.09%), Query Frame = 3 Query: 75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 A+ R++V ++RRREGKT+YR R++L+ K R VVR + IAQI+ + GD L +A+ EL R +G + N +AY GLL+ + K +E A+LD+GL G+ +F +PHS + F E +R I G H+A Y L E + ++++ F Y++KG+D + Sbjct: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPE 179
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14 Identity = 65/217 (29.95%), Postives = 97/217 (44.70%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGI 734 R++V ++RRREGKT+Y R LI D R V R T IAQIV GD LA+A++ EL ++G + N AAY TG L R L E +E RA++D+GL + G+RVF IPH ++ + I G H+A + E++PE+Y+ F++Y+++G+ Sbjct: 9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRAL---------ERGIE-----------------RAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGL 179
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14 Identity = 64/220 (29.09%), Postives = 99/220 (45.00%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 R++V ++RRREGKT+Y R++L+ + K R VVR + IAQI+ N GD + +A+ EL R +G + N +AY GLL+ + K +E A+LD+GL T G+ VF +PHS++ F E +R I G HVA Y L +++ Y+ F Y+ KG++ + Sbjct: 6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIF-----------PEDYR--IRGEHVAEYAKALKQEDETLYRKQFGGYLVKGLEPE 179
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14 Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 572 R+ V ++RR EGKTDY R+ L++ TP R VVR TN+ II Q+V + GDS L AAY+ EL YG E + AAY TG+L A V+A Y A+LD+GL + G RVF +P+ + Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14 Identity = 65/224 (29.02%), Postives = 101/224 (45.09%), Query Frame = 3 Query: 75 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743 A+ R++V ++RRREGKT+Y R++L+ + K R VVR T IAQIV + GD L +A+ EL R +G + N +AY GLL+ Y + A A+LD+GL T G+ +F +PHS+ ++ E +R I G H+A Y L E++ Y+ F+ Y+ KG++ + Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--INGEHIANYAKALKEEDEALYRKQFSGYLVKGLEPE 179
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_SULAC (50S ribosomal protein L18P OS=Sulfolobus acidocaldarius GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14 Identity = 62/217 (28.57%), Postives = 92/217 (42.40%), Query Frame = 3 Query: 90 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGID 737 +++K++RRREGKTDY R + + RFV R TNK +I + + GD ++A A++ EL +YG + N AAY TG L R +K V+A A+ D+GL G R+F +P D GK D + G H++AY L + E Y F+ YI++G+D Sbjct: 7 YRIKFRRRREGKTDYYTRYTYVINNA-------IRFVPRLTNKYVIVSVSKFDQKGDIMIAYAHSIELVKKYGWKGDTNNTPAAYLTGYLAGLRAVK---------SGVKA-----------------AVSDIGLFVPVKGGRIFAVIKGAIDAGLKVPVGDL--------GKLKDR------VNGSHISAYAQKLKNENQELYNKLFSSYIQRGLD 176
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14 Identity = 64/206 (31.07%), Postives = 91/206 (44.17%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQS 704 R+ V ++RRREGKTDY R +LI ++ R VVR TN+ II Q++ A + GD L A + EL YG + +N AAY TG+L A V+A D+ PA A+LD+GL + T G +VF +PH ++ + + G H+AAY D E +S Sbjct: 6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAYAPDRAGDLVENVES 165
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14 Identity = 64/217 (29.49%), Postives = 93/217 (42.86%), Query Frame = 3 Query: 87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGI 734 R++V +RRREGKT+Y R + K RFVVR +NK + Q++ GD V+AAA++ EL + YG + + A Y TG+L A R K G Y+V D+GL K T G RVF +P D I G H+A+Y +L + PE+YQ F + +++G+ Sbjct: 6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD--------------VVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGL 175
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13 Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 3 Query: 51 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 191 FVK K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTP + Sbjct: 2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48 The following BLAST results are available for this feature:
BLAST of CX295305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295305 ID=CX295305; Name=CX295305; organism=Citrus clementina; type=EST; length=744bpback to top |