CX295305

Overview
NameCX295305
Unique NameCX295305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:16..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_SULIN (50S ribosomal protein L18P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 57/219 (26.03%), Postives = 94/219 (42.92%), Query Frame = 3
Query:   90 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 743
            +++K++RRREGKT+Y  R   +        + + RF+VR TNK +I QI   +  GD ++A+A++ EL  ++  +    N  +AY TG L A R +K        +G  E                   + D+GL   + GN+VF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+ +G++ +
Sbjct:    7 YKIKHRRRREGKTNYYKRYVYVI-------SKQIRFIVRITNKYVIVQIAKIDPKGDIMVASAHSSELTKKFEWKGDENNTPSAYLTGYLAALRAVK--------KGVTE------------------CVADIGLHVPSKGNKVFYAIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENLDLYNKLFSRYLGRGLNPE 178          
BLAST of CX295305 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 56/206 (27.18%), Postives = 94/206 (45.63%), Query Frame = 3
Query:   87 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQS 704
            R++V ++RRREG+T+Y  R++L+   ++       R VVR +++++  Q+++    GD   ++A ++EL +YG      N  AAY TGLL     LK L+    YEG +                     LD+GL  ++ G+RV+            IP S + F    +             I G H+A Y      D PE++++
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEGGI---------------------LDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVFPPDER-------------IRGEHIAGYREE-SSDLPEQFEA 164          
The following BLAST results are available for this feature:
BLAST of CX295305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL18_SULIN1.101e-1126.0350S ribosomal protein L18P OS=Sulfolobus islandicu... [more]
RL18_METAC5.465e-1127.1850S ribosomal protein L18P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionC05070G11SK PhIFruit1 Citrus clementina cDNA clone C05070G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295305 ID=CX295305; Name=CX295305; organism=Citrus clementina; type=EST; length=744bp
GAGGCTTCCCTCTCCTTTTCTCTTACAATTCGAAAGTTCGAGCAATGGCC
TTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAA
GTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCC
TGATTAATCAGGACAAGAATAAGTACAACACACCCAAGTACCGATTTGTT
GTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACAT
TGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTT
ATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGG
CTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTA
TGAGGGCAATGTTGAGGCTACTGGAGAGGATTACTCTGTCGAACCAGCTG
ATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACA
ACAACTGGAAACCGTGTGTTTGGTGCTCTGAAGGGAGCATTAGATGGTGG
ATTGGACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAAGGACG
GCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACAT
GTTGCTGCTTACATGAGTACATTGATGGAAGATGAGCCAGAGAAGTATCA
ATCTCACTTCACTGAGTACATCAAGAAAGGAATTGATGCTGATG
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