CX295309

Overview
NameCX295309
Unique NameCX295309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_PIG (Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.411e-44
Identity = 94/158 (59.49%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV  V GYGK    ++V+    +G   V+  KNI+IATGS+V   PGITIDE  +VSSTGAL+L +VP
Sbjct:   56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVP 213          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_RAT (Dihydrolipoyl dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dld PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.143e-44
Identity = 94/158 (59.49%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++   V ++L  MM QK  AV  LT GI  LFK+NKV +V G+GK    ++V+  T +G   V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP
Sbjct:   56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHLAHGKDFASRGIEIPEVRLNLEKMMEQKRSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATTADGSTQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVP 213          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_CRIGR (Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus GN=DLD PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.361e-44
Identity = 93/158 (58.86%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  L  GI  LFK+NKV +V G+GK    ++V+    +G + V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP
Sbjct:   56 AAIKAAQLGFKTVCIEKNDTLGGTCLNVGCIPSKALLNNSHYYHLAHGRDFASRGIELSEVRLNLEKMMEQKSSAVKALIGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSSQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVP 213          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_MOUSE (Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus musculus GN=Dld PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.194e-43
Identity = 95/181 (52.49%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  133 RGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            R +A    E D            AAIK+AQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++   V ++L  MM QK  AV  LT GI  LFK+NKV +V G+GK    ++V+    +G   V+  KNI++ATGS+V   PGITIDE  IVSSTGAL+L +VP
Sbjct:   33 RTYADQPIEADVTVIGSGPGGYVAAIKSAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEIPEVRLNLEKMMEQKHSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSTQVIDTKNILVATGSEVTPFPGITIDEDTIVSSTGALSLKKVP 213          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_TRYCR (Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi GN=LPD PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 89/158 (56.33%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK-FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            A+IKAAQLG+KT C+EKRGALGGTCLNVGCIPSKALLH++H+YH+A  +FA +G+     V +D   M  QK++AV  LT G+E LFKKNKVTY KG G F +   + V+ ++G   + + K  IIATGS+   LP +  DEK ++SSTGALAL  VP
Sbjct:   26 ASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHVYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMFETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVP 183          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_MANSE (Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.460e-41
Identity = 87/157 (55.41%), Postives = 111/157 (70.70%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAIKAAQLG+K   +EK  +LGGTCLNVGCIPSKALLH++H+YH A H F   G++   V+ +  AMM  K  AV  LT GI  LF+KNKV  V+G G  ++P++V V   +G  T V  KNI+IATGS+V   PG+T DEK+I++STGAL+L  VP
Sbjct:   45 AAIKAAQLGMKVVSVEKEPSLGGTCLNVGCIPSKALLHNTHLYHMAKHDFKHRGIETGEVKFNFKAMMDYKVNAVKALTGGIAMLFQKNKVKLVRGAGTIVAPNKVEVKGEKGVET-VNTKNILIATGSEVTPFPGVTFDEKQIITSTGALSLESVP 200          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_YEAST (Dihydrolipoyl dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=LPD1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.907e-41
Identity = 93/194 (47.94%), Postives = 121/194 (62.37%), Query Frame = 1
Query:  112 KYSFSLTRGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG------KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            K +FS T    + +  +D            AAIKAAQLG  T C+EKRG LGGTCLNVGCIPSKALL++SH++H+        G+  +  +++++      KD AV  LT GIE LFKKNKVTY KG G F   +++ V  ++G    VK       KNII+ATGS+V   PGI IDE++IVSSTGAL+L E+P
Sbjct:   11 KRAFSSTVRTLTINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLKEIP 204          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEPU (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putida GN=lpd3 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+A QLGL   C+E R  LGGTCLNVGC+PSKALLH+S +Y  A    FA  G++     ++L  MM QKD++V+ LT+GIE LF+KNKV ++KG+G+     +V V   +G  T ++ K+I+IATGS+   LPG+TID +RI+ STGAL+L +VP
Sbjct:   18 AAIRAGQLGLTVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGDEFAHLGIEVKPT-LNLAQMMKQKDESVTGLTKGIEYLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETALQAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPQVP 174          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEAE (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas aeruginosa GN=lpd3 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.511e-38
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+A QLGLK  C+E R  LGGTCLNVGC+PSKALLH+S +Y  A    FA  G++ S  E+DL  MM QKD++V+ LTRG+E LF+K+KV ++KG+ +      V V   +GG+  ++ ++I+IATGS+   LPG+ +D +RI+ STGAL L EVP
Sbjct:   19 AAIRAGQLGLKVACVEGRETLGGTCLNVGCMPSKALLHASELYAAASGGEFARLGIRVSP-ELDLAQMMKQKDESVAALTRGVEFLFRKHKVQWIKGWARLQGEGRVGVALADGGHAQLEARDIVIATGSEPAPLPGVPVDNQRILDSTGALELVEVP 175          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_RHOCA (Dihydrolipoyl dehydrogenase OS=Rhodobacter capsulatus GN=lpd PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38
Identity = 84/156 (53.85%), Postives = 107/156 (68.59%), Query Frame = 1
Query:  205 AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AI+ AQLGLKT C+E RGALGGTCLNVGCIPSKALLH++H  HE   +F   G+  + V+VD           +   T+GIE LFKKNKVTY++G+G   +P +V V     G+ V   KNI+IATGS+   LPGI IDE+ +V+STGAL+L +VP
Sbjct:   19 AIRCAQLGLKTACVEGRGALGGTCLNVGCIPSKALLHATHELHEVHENFEKMGLMGAKVKVDW--------AKIDGNTKGIEFLFKKNKVTYLRGWGSIPAPGQVKV-----GDEVHTAKNIVIATGSESSGLPGIEIDEQTVVTSTGALSLAKVP 161          
The following BLAST results are available for this feature:
BLAST of CX295309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
DLDH_PIG1.411e-4459.49Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus ... [more]
DLDH_RAT3.143e-4459.49Dihydrolipoyl dehydrogenase, mitochondrial OS=Ratt... [more]
DLDH_CRIGR5.361e-4458.86Dihydrolipoyl dehydrogenase, mitochondrial OS=Cric... [more]
DLDH_MOUSE1.194e-4352.49Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus ... [more]
DLDH_TRYCR5.927e-4356.33Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi G... [more]
DLDH_MANSE1.460e-4155.41Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 ... [more]
DLDH_YEAST1.907e-4147.94Dihydrolipoyl dehydrogenase, mitochondrial OS=Sacc... [more]
DLDH3_PSEPU3.976e-3951.90Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putid... [more]
DLDH3_PSEAE1.511e-3851.90Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas aerug... [more]
DLDH_RHOCA2.577e-3853.85Dihydrolipoyl dehydrogenase OS=Rhodobacter capsula... [more]

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Properties
Property NameValue
Genbank descriptionC05070H03SK PhIFruit1 Citrus clementina cDNA clone C05070H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295309 ID=CX295309; Name=CX295309; organism=Citrus clementina; type=EST; length=672bp
CGATTGATTGGAGAAAAAGTTGATTGAAAAATGGCGATGGCAAGTCTTGC
AAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGAATG
GTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCGGCA
TCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTACGT
GGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCGAGA
AGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCCTCT
AAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTCTTT
TGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTGCTA
TGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATTGAA
GGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCAAGTT
TATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACACTG
TCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAGTCT
CTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGGAGC
TTTAGCATTGAATGAAGTTCCT
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