CX295309

Overview
NameCX295309
Unique NameCX295309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:52..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_PSEFL (Dihydrolipoyl dehydrogenase OS=Pseudomonas fluorescens GN=lpd PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38
Identity = 84/163 (51.53%), Postives = 109/163 (66.87%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS+ YHEA  +F  HG++   V +D+PAM+A+K   V NLT GI  LFK N VT  +G+GK ++  +V V  ++G   V++ +N+IIA+GS    +P   + +  IV STGAL    VP
Sbjct:   19 AAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAVP 181          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEAE (Dihydrolipoamide dehydrogenase OS=Pseudomonas aeruginosa GN=lpdG PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 84/163 (51.53%), Postives = 109/163 (66.87%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS+ YHEA  +F  HG++   V +D+PAM+A+K   V NLT GI  LFK N VT  +G+GK ++  +V V  ++G   V++ +N+IIA+GS    +P   + +  IV STGAL    VP
Sbjct:   19 AAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLTDDIIVDSTGALEFQAVP 181          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_AZOVI (Dihydrolipoyl dehydrogenase OS=Azotobacter vinelandii PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.849e-37
Identity = 81/163 (49.69%), Postives = 107/163 (65.64%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAIK+AQLGLKT  IEK      + ALGGTCLNVGCIPSKALL SS+ +HEA  SF  HG+    V +D+P M+A+KD+ V NLT G+  L K N VT  +G+GK ++  +V V   +G + V+  +N+I+A+GS    +P   +D+  IV STGAL    VP
Sbjct:   19 AAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVP 181          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEPU (Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 2.412e-36
Identity = 82/163 (50.31%), Postives = 106/163 (65.03%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAIKAAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS  Y EA  SF  HG+    V++D+ AM+ +K   V NLT G+  LFK N VT ++G+GK ++  +V V   +G   V++ +N+I+A+GS    +P   +D+  IV STGAL    VP
Sbjct:   19 AAIKAAQLGLKTACIEKYTDAEGKLALGGTCLNVGCIPSKALLDSSWKYKEAKESFNVHGISTGEVKMDVAAMVGRKAGIVKNLTGGVATLFKANGVTSIQGHGKLLAGKKVEVTKADGTTEVIEAENVILASGSRPIDIPPAPVDQNVIVDSTGALEFQAVP 181          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_RALEH (Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhL PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.260e-33
Identity = 76/165 (46.06%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+A QLGL   C E            LGGTCLNVGCIPSKALL SS  +    H    HG+    V+VD+  M+ +KD  V  +T+GIE LF+KNKVT +KGYGKF+  S      ++    VV  K +IIATGS  + LPGI +D   +  + GAL    VP
Sbjct:   19 AAIRAGQLGLNVACCEGNPYDDPKGEARLGGTCLNVGCIPSKALLASSEEFENVQHHLGDHGITVGDVKVDVAKMLKRKDDIVGKMTKGIEFLFRKNKVTLLKGYGKFVGKSAEGFQ-VDVAGEVVTAKQVIIATGSKARHLPGIKVDNDLVSDNEGALKFPAVP 182          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_VIBPA (Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyticus GN=lpd PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.877e-31
Identity = 75/157 (47.77%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH S +  EA  + A HGV F   + D+  +   K+K V+ LT G+ G+ K   VT V GYGKF  P+ + V+  EG +TVV   N I+A GS    LP I  ++ RI  ST AL L EVP
Sbjct:   21 AAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHVSKVIEEA-KAMADHGVVFGEPQTDINKIRIWKEKVVNQLTGGLSGMAKMRNVTVVNGYGKFTGPNSILVEG-EGESTVVNFDNAIVAAGSRPIKLPFIPHEDPRIWDSTDALELKEVP 175          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_VIBCH (Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=lpd PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.515e-30
Identity = 73/157 (46.50%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA + A LGL T  IE+   LGG CLNVGCIPSKALLH + +  EA  +   HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V GYGKF  P+ + VD  E G TVV   N I+A GS    LP I  ++ RI  ST AL L EVP
Sbjct:   21 AAFRCADLGLDTVIIERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALTEHGIVFGEPKTDIDKVRLWKEKVINQLTGGLAGMAKMRKVNVVNGYGKFTGPNTIEVDG-EEGKTVVTFDNAIVAAGSRPIKLPFIPHEDPRIWDSTDALELKEVP 175          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_STAAW (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=pdhD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 78/157 (49.68%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVP 176          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_STAAU (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus GN=pdhD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 78/157 (49.68%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVP 176          
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_STAAS (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=pdhD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 78/157 (49.68%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVP 176          
The following BLAST results are available for this feature:
BLAST of CX295309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
DLDH_PSEFL2.577e-3851.53Dihydrolipoyl dehydrogenase OS=Pseudomonas fluores... [more]
DLDH2_PSEAE3.365e-3851.53Dihydrolipoamide dehydrogenase OS=Pseudomonas aeru... [more]
DLDH_AZOVI2.849e-3749.69Dihydrolipoyl dehydrogenase OS=Azotobacter vinelan... [more]
DLDH2_PSEPU2.412e-3650.31Dihydrolipoamide dehydrogenase OS=Pseudomonas puti... [more]
DLDH_RALEH3.260e-3346.06Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha ... [more]
DLDH_VIBPA8.877e-3147.77Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyt... [more]
DLDH_VIBCH7.515e-3046.50Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=... [more]
DLDH_STAAW1.085e-2849.68Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAU1.085e-2849.68Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAS1.085e-2849.68Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionC05070H03SK PhIFruit1 Citrus clementina cDNA clone C05070H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295309 ID=CX295309; Name=CX295309; organism=Citrus clementina; type=EST; length=672bp
CGATTGATTGGAGAAAAAGTTGATTGAAAAATGGCGATGGCAAGTCTTGC
AAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGAATG
GTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCGGCA
TCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTACGT
GGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCGAGA
AGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCCTCT
AAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTCTTT
TGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTGCTA
TGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATTGAA
GGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCAAGTT
TATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACACTG
TCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAGTCT
CTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGGAGC
TTTAGCATTGAATGAAGTTCCT
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