CX295309

Overview
NameCX295309
Unique NameCX295309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_STAAR (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=pdhD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 78/157 (49.68%), Postives = 95/157 (60.51%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVP 176
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_STAAN (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain N315) GN=pdhD PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 78/157 (49.68%), Postives = 95/157 (60.51%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVP 176
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_STAAM (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhD PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 78/157 (49.68%), Postives = 95/157 (60.51%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVP 176
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_STAAC (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain COL) GN=pdhD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 78/157 (49.68%), Postives = 95/157 (60.51%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKALLH+SH + EA HS  + GV   SV ++   +   K   V+ LT G+EGL K NKV  VKG   F+  + + V   +   T    KN IIATGS    +P      KR++ STGAL L EVP
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALLHASHRFVEAQHS-ENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMDEKSAQT-YNFKNAIIATGSRPIEIPNFKFG-KRVIDSTGALNLQEVP 176
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH1_BACST (Dihydrolipoyl dehydrogenase OS=Bacillus stearothermophilus GN=pdhD PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 78/157 (49.68%), Postives = 92/157 (58.60%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AAI+AAQLG K T +EK G LGG CLNVGCIPSKAL+ +SH Y +A HS    G+K  +V +D   +   K   V  LT G+EGL K NKV  VKG   F+  + V V   +   T    KN IIATGS    LP       RI+ STGAL L EVP
Sbjct:   24 AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRYEQAKHS-EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYT-FKNAIIATGSRPIELPNFKF-SNRILDSTGALNLGEVP 176
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_CHLMU (Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum GN=lpdA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.157e-28
Identity = 70/159 (44.03%), Postives = 101/159 (63.52%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK--RIVSSTGALALNEVP 672
            AAI AAQ GLKT  IE+R A GGTCLN GCIPSKALL S+ +  +  H+    G+  +   +D PAM+ +KD  V ++  G+ GL + NK+T   G G  IS +EV +  +    +V+K ++II+ATGS+ ++ PG+   ++  RI+ STG L L E+P
Sbjct:   19 AAITAAQAGLKTALIEEREA-GGTCLNRGCIPSKALLASAEIVAQIRHA-DQFGIHINGFSIDYPAMVQRKDTVVRSIRDGLNGLIRSNKITVFSGRGSLISSTEVKI--LGETPSVIKAQSIILATGSEPRAFPGVPFSQQSPRILCSTGVLNLKEIP 173
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_SHIFL (Dihydrolipoyl dehydrogenase OS=Shigella flexneri GN=lpdA PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.124e-28
Identity = 70/157 (44.59%), Postives = 92/157 (58.60%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G GKF   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEA-KALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVP 175
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_ECOLI (Dihydrolipoyl dehydrogenase OS=Escherichia coli (strain K12) GN=lpdA PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.124e-28
Identity = 70/157 (44.59%), Postives = 92/157 (58.60%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G GKF   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEA-KALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVP 175
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_ECOL6 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O6 GN=lpdA PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.124e-28
Identity = 70/157 (44.59%), Postives = 92/157 (58.60%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G GKF   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEA-KALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVP 175
[Close]
BLAST of CX295309 vs. ExPASy Swiss-Prot
Match: DLDH_ECO57 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O157:H7 GN=lpdA PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.124e-28
Identity = 70/157 (44.59%), Postives = 92/157 (58.60%), Query Frame = 1 
Query:  202 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 672
            AA + A LGL+T  +E+   LGG CLNVGCIPSKALLH + +  EA  + A HG+ F   + D+  +   K+K ++ LT G+ G+ K  KV  V G GKF   + + V+  E G TV+   N IIA GS    LP I  ++ RI  ST AL L EVP
Sbjct:   21 AAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEA-KALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEG-ENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVP 175
The following BLAST results are available for this feature:
BLAST of CX295309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
DLDH_STAAR1.085e-2849.68Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAN1.085e-2849.68Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAM1.085e-2849.68Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAC1.085e-2849.68Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH1_BACST1.085e-2849.68Dihydrolipoyl dehydrogenase OS=Bacillus stearother... [more]
DLDH_CHLMU3.157e-2844.03Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum... [more]
DLDH_SHIFL4.124e-2844.59Dihydrolipoyl dehydrogenase OS=Shigella flexneri G... [more]
DLDH_ECOLI4.124e-2844.59Dihydrolipoyl dehydrogenase OS=Escherichia coli (s... [more]
DLDH_ECOL64.124e-2844.59Dihydrolipoyl dehydrogenase OS=Escherichia coli O6... [more]
DLDH_ECO574.124e-2844.59Dihydrolipoyl dehydrogenase OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionC05070H03SK PhIFruit1 Citrus clementina cDNA clone C05070H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295309 ID=CX295309; Name=CX295309; organism=Citrus clementina; type=EST; length=672bp
CGATTGATTGGAGAAAAAGTTGATTGAAAAATGGCGATGGCAAGTCTTGC
AAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACTCGTCGAATG
GTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTCGCTTCGGCA
TCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGGTGGTTACGT
GGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGTGCATCGAGA
AGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGCATCCCCTCT
AAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCATGCATTCTTT
TGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATTTGCCTGCTA
TGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGAGGTATTGAA
GGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATATGGCAAGTT
TATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTGGAAACACTG
TCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGACGTTAAGTCT
CTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATCCACTGGAGC
TTTAGCATTGAATGAAGTTCCT
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